Wall clock time and date at job start Mon Mar 30 2020 02:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46926 * 270.00348 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99634 * 3 2 1 6 6 H 1.48494 * 109.47527 * 150.00120 * 3 2 1 7 7 C 1.37883 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99815 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00023 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.38249 * 119.93047 * 269.72765 * 12 11 10 14 14 C 1.38243 * 120.15069 * 179.72429 * 13 12 11 15 15 C 1.38562 * 119.99449 * 0.54964 * 14 13 12 16 16 O 1.36000 * 120.07208 * 179.70115 * 15 14 13 17 17 C 1.39151 * 119.85773 * 359.72662 * 15 14 13 18 18 O 1.35992 * 120.07532 * 180.02562 * 17 15 14 19 19 C 1.38245 * 119.92824 * 90.00180 * 12 11 10 20 20 H 0.96999 * 120.00132 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 22 22 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 23 23 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 24 24 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 25 25 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 26 26 H 1.08008 * 119.92326 * 359.97438 * 13 12 11 27 27 H 1.07996 * 120.00285 * 180.24774 * 14 13 12 28 28 H 0.96698 * 114.00275 * 270.02262 * 16 15 14 29 29 H 0.96701 * 113.99928 * 269.98101 * 18 17 15 30 30 H 1.08003 * 119.99470 * 359.97385 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4697 -2.6182 0.0001 12 6 5.9340 -4.0519 -0.0004 13 6 6.1519 -4.7068 1.1975 14 6 6.5723 -6.0237 1.2023 15 6 6.7872 -6.6867 0.0048 16 8 7.2067 -7.9804 0.0077 17 6 6.5735 -6.0258 -1.2010 18 8 6.7825 -6.6724 -2.3790 19 6 6.1466 -4.7076 -1.1987 20 1 -0.4850 0.8400 0.0004 21 1 3.8751 -0.6796 0.8895 22 1 3.8746 -0.6808 -0.8904 23 1 3.6260 -3.0952 0.7817 24 1 5.8466 -2.1142 -0.8899 25 1 5.8466 -2.1142 0.8901 26 1 5.9893 -4.1896 2.1316 27 1 6.7379 -6.5343 2.1395 28 1 8.1683 -8.0821 0.0089 29 1 7.6835 -6.5873 -2.7198 30 1 5.9795 -4.1924 -2.1331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:50 Heat of formation + Delta-G solvation = -60.802872 kcal Electronic energy + Delta-G solvation = -14377.359800 eV Core-core repulsion = 11751.943845 eV Total energy + Delta-G solvation = -2625.415955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.19453 -37.25910 -36.97999 -35.00841 -32.47165 -30.60400 -29.71921 -27.22951 -24.27996 -22.82289 -21.37345 -21.08698 -18.82119 -17.67994 -16.83953 -16.32982 -15.94220 -15.06330 -14.78779 -14.19858 -14.00028 -13.67637 -13.62321 -12.75579 -12.50944 -12.32988 -11.85604 -11.73158 -11.38926 -11.22445 -10.66513 -10.55748 -10.20618 -9.87836 -9.32353 -8.83530 -8.61056 -8.47861 -7.53039 -6.07146 -4.05698 1.11665 1.24672 3.27270 3.34395 3.35792 3.50018 4.02517 4.05666 4.40056 4.84712 4.90201 5.23359 5.25767 5.34851 5.42021 5.59874 5.74221 5.96233 5.99039 6.20404 6.28103 6.59892 6.68451 6.74957 6.96762 7.29876 7.55517 7.71586 7.83166 8.25908 8.62025 9.01298 9.53971 11.06149 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.053541 B = 0.005041 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.836428 B = 5553.492313 C = 5609.152488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.675 5.675 11 C 0.091 3.909 12 C -0.060 4.060 13 C -0.107 4.107 14 C -0.131 4.131 15 C 0.069 3.931 16 O -0.490 6.490 17 C 0.077 3.923 18 O -0.488 6.488 19 C -0.108 4.108 20 H 0.264 0.736 21 H -0.014 1.014 22 H 0.023 0.977 23 H 0.338 0.662 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.382 0.618 29 H 0.382 0.618 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.678 -9.764 0.750 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.305 5.305 11 C -0.038 4.038 12 C -0.060 4.060 13 C -0.126 4.126 14 C -0.149 4.149 15 C 0.024 3.976 16 O -0.299 6.299 17 C 0.032 3.968 18 O -0.297 6.297 19 C -0.127 4.127 20 H 0.074 0.926 21 H 0.003 0.997 22 H 0.041 0.959 23 H 0.155 0.845 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.236 0.764 29 H 0.237 0.763 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.253 -9.971 0.116 19.928 hybrid contribution 1.496 1.344 0.796 2.163 sum 18.750 -8.627 0.912 20.659 Atomic orbital electron populations 1.69898 1.06179 1.26918 1.50812 1.24908 0.94753 0.98946 0.94689 0.86813 0.80202 0.83815 0.78603 1.20108 1.21173 1.19287 1.21054 0.88859 0.94907 1.50791 0.90236 1.20034 0.96780 0.84697 0.94873 1.60553 1.03239 1.16952 1.49791 1.20935 0.91366 0.90624 1.00886 1.19920 0.96934 0.96878 0.92288 1.21027 0.99402 0.94037 0.98150 1.21265 1.01779 0.94549 0.97324 1.18768 1.02448 0.84506 0.91886 1.84936 1.26899 1.21557 1.96459 1.18785 1.02508 0.90619 0.84851 1.84947 1.34773 1.74280 1.35680 1.21283 0.99477 0.92846 0.99143 0.92598 0.99682 0.95878 0.84461 0.90630 0.94966 0.85388 0.85181 0.76374 0.76267 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.94 9.87 -34.44 -0.34 -15.28 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.16 3.96 4.51 -4.98 -0.02 3.94 16 10 N -0.67 -14.01 6.48 -116.34 -0.75 -14.77 16 11 C 0.09 1.49 5.81 -4.97 -0.03 1.46 16 12 C -0.06 -0.86 5.39 -104.62 -0.56 -1.42 16 13 C -0.11 -1.37 9.69 -39.58 -0.38 -1.76 16 14 C -0.13 -1.56 9.98 -39.46 -0.39 -1.95 16 15 C 0.07 0.87 6.72 -39.12 -0.26 0.61 16 16 O -0.49 -5.48 13.29 -34.24 -0.46 -5.93 16 17 C 0.08 1.03 6.72 -39.12 -0.26 0.77 16 18 O -0.49 -5.91 13.29 -34.22 -0.45 -6.37 16 19 C -0.11 -1.53 9.63 -39.46 -0.38 -1.91 16 20 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 21 H -0.01 -0.35 7.20 -51.93 -0.37 -0.72 16 22 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 23 H 0.34 6.89 8.71 -39.29 -0.34 6.55 16 24 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 25 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 27 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.38 2.13 9.06 45.56 0.41 2.55 16 29 H 0.38 2.45 9.06 45.56 0.41 2.86 16 30 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 267.35 15.07 4.03 4.03 Total: -1.00 -34.36 267.35 -6.25 -40.61 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -1.98 Total: 6.28 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.74 Total: -13.64 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.02 Total: -41.79 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.91 Total: -12.30 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -34.36 -6.25 -40.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.191 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds