Wall clock time and date at job start Mon Mar 30 2020 02:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46926 * 270.00348 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99634 * 3 2 1 6 6 H 1.48494 * 109.47527 * 150.00120 * 3 2 1 7 7 C 1.37883 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99815 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00023 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.38249 * 119.93047 * 269.72765 * 12 11 10 14 14 C 1.38243 * 120.15069 * 179.72429 * 13 12 11 15 15 C 1.38562 * 119.99449 * 0.54964 * 14 13 12 16 16 O 1.36000 * 120.07208 * 179.70115 * 15 14 13 17 17 C 1.39151 * 119.85773 * 359.72662 * 15 14 13 18 18 O 1.35992 * 120.07532 * 180.02562 * 17 15 14 19 19 C 1.38245 * 119.92824 * 90.00180 * 12 11 10 20 20 H 0.96999 * 120.00132 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 22 22 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 23 23 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 24 24 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 25 25 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 26 26 H 1.08008 * 119.92326 * 359.97438 * 13 12 11 27 27 H 1.07996 * 120.00285 * 180.24774 * 14 13 12 28 28 H 0.96698 * 114.00275 * 270.02262 * 16 15 14 29 29 H 0.96701 * 113.99928 * 269.98101 * 18 17 15 30 30 H 1.08003 * 119.99470 * 359.97385 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4697 -2.6182 0.0001 12 6 5.9340 -4.0519 -0.0004 13 6 6.1519 -4.7068 1.1975 14 6 6.5723 -6.0237 1.2023 15 6 6.7872 -6.6867 0.0048 16 8 7.2067 -7.9804 0.0077 17 6 6.5735 -6.0258 -1.2010 18 8 6.7825 -6.6724 -2.3790 19 6 6.1466 -4.7076 -1.1987 20 1 -0.4850 0.8400 0.0004 21 1 3.8751 -0.6796 0.8895 22 1 3.8746 -0.6808 -0.8904 23 1 3.6260 -3.0952 0.7817 24 1 5.8466 -2.1142 -0.8899 25 1 5.8466 -2.1142 0.8901 26 1 5.9893 -4.1896 2.1316 27 1 6.7379 -6.5343 2.1395 28 1 8.1683 -8.0821 0.0089 29 1 7.6835 -6.5873 -2.7198 30 1 5.9795 -4.1924 -2.1331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:50 Heat of formation + Delta-G solvation = -89.764141 kcal Electronic energy + Delta-G solvation = -14378.615655 eV Core-core repulsion = 11751.943845 eV Total energy + Delta-G solvation = -2626.671809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14872 -38.36312 -37.87641 -36.52197 -34.51689 -31.85661 -30.84678 -28.91597 -25.70137 -23.79355 -23.13242 -22.34306 -19.73741 -19.06110 -18.50547 -17.40257 -17.05609 -16.55483 -15.90760 -15.76272 -15.55866 -14.95810 -14.67623 -14.52572 -13.89895 -13.55983 -13.36702 -12.97266 -12.64614 -12.60835 -12.33325 -12.08177 -11.83360 -11.51617 -11.12234 -10.81258 -9.81806 -9.50454 -9.12506 -8.30190 -6.35731 0.14116 0.27430 1.36279 1.38174 1.49129 2.34558 2.52514 3.03924 3.11888 3.25551 3.64434 3.86964 3.96749 4.31893 4.33715 4.55301 4.67501 4.77352 4.89436 4.98309 5.05482 5.22671 5.31380 5.49962 5.60067 5.77459 5.92595 6.52632 6.62474 6.65159 6.74370 6.98066 7.29355 8.86836 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.053541 B = 0.005041 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.836428 B = 5553.492313 C = 5609.152488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.246 1.246 7 C -0.533 4.533 8 H 0.033 0.967 9 C 0.174 3.826 10 N -0.688 5.688 11 C 0.095 3.905 12 C -0.076 4.076 13 C -0.108 4.108 14 C -0.129 4.129 15 C 0.071 3.929 16 O -0.500 6.500 17 C 0.070 3.930 18 O -0.502 6.502 19 C -0.122 4.122 20 H 0.268 0.732 21 H -0.006 1.006 22 H 0.027 0.973 23 H 0.337 0.663 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.143 0.857 27 H 0.154 0.846 28 H 0.407 0.593 29 H 0.406 0.594 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.058 -9.563 1.265 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.051 0.949 9 C 0.046 3.954 10 N -0.319 5.319 11 C -0.033 4.033 12 C -0.076 4.076 13 C -0.126 4.126 14 C -0.147 4.147 15 C 0.026 3.974 16 O -0.313 6.313 17 C 0.025 3.975 18 O -0.314 6.314 19 C -0.141 4.141 20 H 0.077 0.923 21 H 0.011 0.989 22 H 0.045 0.955 23 H 0.154 0.846 24 H 0.097 0.903 25 H 0.066 0.934 26 H 0.161 0.839 27 H 0.172 0.828 28 H 0.266 0.734 29 H 0.265 0.735 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.694 -9.800 0.622 22.007 hybrid contribution 0.776 1.085 0.605 1.465 sum 20.471 -8.715 1.227 22.283 Atomic orbital electron populations 1.70063 1.08350 1.28327 1.52212 1.25937 0.95662 1.03517 0.93972 0.85594 0.79355 0.77929 0.79281 1.19069 1.20667 1.16975 1.21357 0.91564 0.93391 1.50766 0.94852 1.19781 0.93565 0.86880 0.95158 1.60428 1.06442 1.14944 1.50107 1.20941 0.88281 0.92407 1.01717 1.19784 0.98569 0.96097 0.93165 1.21204 0.98840 0.94514 0.98086 1.21508 1.00855 0.94211 0.98134 1.18876 1.01901 0.84833 0.91819 1.84865 1.29381 1.20638 1.96370 1.18854 1.02626 0.90418 0.85585 1.84877 1.37051 1.74060 1.35437 1.21322 1.00241 0.93527 0.98978 0.92306 0.98862 0.95466 0.84581 0.90287 0.93446 0.83939 0.82807 0.73434 0.73537 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 2 C 0.01 0.38 5.47 84.66 0.46 0.85 16 3 Si 0.96 43.78 27.47 68.60 1.88 45.66 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 7 C -0.53 -31.36 9.87 25.60 0.25 -31.11 16 8 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 9 C 0.17 8.30 4.51 85.56 0.39 8.69 16 10 N -0.69 -28.34 6.48 -521.98 -3.38 -31.73 16 11 C 0.10 2.96 5.81 85.55 0.50 3.46 16 12 C -0.08 -2.09 5.39 -19.86 -0.11 -2.20 16 13 C -0.11 -2.54 9.69 22.27 0.22 -2.32 16 14 C -0.13 -2.74 9.98 22.35 0.22 -2.52 16 15 C 0.07 1.64 6.72 22.57 0.15 1.79 16 16 O -0.50 -9.88 13.29 -79.68 -1.06 -10.93 16 17 C 0.07 1.78 6.72 22.57 0.15 1.93 16 18 O -0.50 -11.44 13.29 -79.60 -1.06 -12.50 16 19 C -0.12 -3.34 9.63 22.35 0.22 -3.13 16 20 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 21 H -0.01 -0.29 7.20 -2.39 -0.02 -0.30 16 22 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 23 H 0.34 13.79 8.71 -89.69 -0.78 13.01 16 24 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 25 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 26 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 27 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.41 3.34 9.06 -74.06 -0.67 2.67 16 29 H 0.41 4.49 9.06 -74.06 -0.67 3.82 16 30 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -74.37 267.35 -1.86 -76.23 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -1.00 Total: 17.54 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 2.45 Total: -24.55 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -3.08 Total: -91.46 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -2.12 Total: -23.43 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -74.37 -1.86 -76.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.531 kcal (2) G-P(sol) polarization free energy of solvation -74.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds