Wall clock time and date at job start Mon Mar 30 2020 03:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.46785 * 90.00046 * 6 5 4 8 8 C 1.46505 * 119.99923 * 269.99683 * 7 6 5 9 9 C 1.34774 * 120.00308 * 90.00314 * 7 6 5 10 10 O 1.21694 * 119.99415 * 359.97438 * 9 7 6 11 11 C 1.46371 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.07998 * 119.99665 * 359.97438 * 11 9 7 13 13 C 1.40044 * 120.00128 * 179.97438 * 11 9 7 14 14 N 1.30673 * 119.99976 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00049 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47023 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47055 * 119.99733 * 15 13 11 18 18 H 1.48502 * 109.47227 * 239.99812 * 15 13 11 19 19 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 20 20 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 21 21 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 22 22 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 23 23 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 24 24 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 26 26 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 27 27 H 1.08992 * 109.47032 * 90.00528 * 8 7 6 28 28 H 1.09004 * 109.47163 * 210.00582 * 8 7 6 29 29 H 1.09002 * 109.47016 * 330.00347 * 8 7 6 30 30 H 0.97005 * 119.99986 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1498 -1.9347 1.4000 8 6 6.1188 -1.0819 2.0929 9 6 4.6074 -2.9923 2.0355 10 8 3.8022 -3.7004 1.4600 11 6 4.9867 -3.2891 3.4176 12 1 5.7016 -2.6609 3.9281 13 6 4.4227 -4.3877 4.0781 14 7 3.5573 -5.1475 3.4605 15 14 4.9074 -4.7669 5.8418 16 1 5.8971 -3.7637 6.3097 17 1 3.7024 -4.7157 6.7082 18 1 5.5083 -6.1232 5.9093 19 8 2.2923 -1.0895 0.0044 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9666 2.1203 -0.0045 24 1 4.5212 1.2433 0.0076 25 1 4.5127 -2.5646 -0.4964 26 1 5.6061 -1.1601 -0.4949 27 1 5.5931 -0.2746 2.6025 28 1 6.6684 -1.6757 2.8233 29 1 6.8159 -0.6611 1.3682 30 1 3.1664 -5.9083 3.9181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035699986.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:01 Heat of formation + Delta-G solvation = -21.503267 kcal Electronic energy + Delta-G solvation = -15172.762240 eV Core-core repulsion = 12549.050444 eV Total energy + Delta-G solvation = -2623.711796 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.01703 -37.63780 -34.12206 -32.66187 -32.44191 -31.62508 -28.70736 -26.12068 -25.41507 -23.49408 -21.25298 -19.92604 -19.14017 -16.46882 -16.13253 -15.76039 -15.52315 -14.34488 -14.27906 -14.14664 -13.23496 -13.00781 -12.73530 -12.37268 -12.30251 -11.96295 -11.65433 -11.54477 -11.44806 -11.20543 -11.03394 -10.82350 -10.25847 -10.13400 -9.39321 -8.87025 -7.95864 -7.52087 -7.33461 -6.19815 -4.65716 2.21717 3.03432 3.12295 3.20521 3.24838 3.46983 4.09614 4.55155 4.66751 5.09995 5.35010 5.45709 5.53403 5.63783 5.74949 5.79525 5.90372 5.97803 6.18044 6.24734 6.36697 6.48086 6.54288 6.67547 7.01510 7.44016 7.52222 7.78972 8.08569 8.30451 9.01215 9.37553 10.56072 10.74715 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033728 B = 0.008029 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.983680 B = 3486.340523 C = 3847.982892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.028 4.028 3 C -0.218 4.218 4 C -0.223 4.223 5 C 0.003 3.997 6 C 0.197 3.803 7 N -0.642 5.642 8 C 0.101 3.899 9 C 0.554 3.446 10 O -0.568 6.568 11 C -0.541 4.541 12 H 0.073 0.927 13 C 0.086 3.914 14 N -0.766 5.766 15 Si 0.907 3.093 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 O -0.156 6.156 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.139 0.861 24 H 0.140 0.860 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 9.989 -4.114 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 C -0.237 4.237 4 C -0.243 4.243 5 C -0.050 4.050 6 C 0.072 3.928 7 N -0.380 5.380 8 C -0.043 4.043 9 C 0.360 3.640 10 O -0.450 6.450 11 C -0.578 4.578 12 H 0.092 0.908 13 C -0.134 4.134 14 N -0.394 5.394 15 Si 0.732 3.268 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.201 1.201 19 O -0.051 6.051 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.157 0.843 24 H 0.158 0.842 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.617 9.100 -4.412 10.132 hybrid contribution 0.310 0.281 0.993 1.077 sum -0.308 9.382 -3.419 9.990 Atomic orbital electron populations 1.20220 0.85867 1.03747 1.02853 1.22400 0.94047 0.84763 1.06699 1.21409 0.92964 0.98711 1.10652 1.21431 0.97692 0.93894 1.11273 1.23525 0.83764 0.94941 1.02801 1.19517 0.89078 0.96977 0.87258 1.48170 1.46798 1.31318 1.11763 1.21441 0.91629 0.94400 0.96810 1.18350 0.80477 0.77976 0.87218 1.90618 1.36496 1.49928 1.67960 1.21030 1.27229 1.13128 0.96394 0.90844 1.25753 0.93434 0.95068 0.99123 1.70038 1.20913 1.12190 1.36285 0.86320 0.79052 0.78835 0.82610 1.18710 1.20166 1.20101 1.84130 1.16532 1.34305 1.70088 0.90642 0.90568 0.89936 0.84270 0.84165 0.89262 0.89349 0.95020 0.90671 0.93872 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.42 36.00 0.38 -0.56 16 2 C -0.03 -0.51 7.32 -35.63 -0.26 -0.77 16 3 C -0.22 -3.63 10.81 -39.71 -0.43 -4.06 16 4 C -0.22 -3.93 10.81 -39.70 -0.43 -4.35 16 5 C 0.00 0.06 6.90 -35.62 -0.25 -0.19 16 6 C 0.20 4.00 5.98 -5.19 -0.03 3.97 16 7 N -0.64 -14.99 2.86 -184.62 -0.53 -15.52 16 8 C 0.10 1.90 10.19 59.85 0.61 2.51 16 9 C 0.55 16.11 7.61 -12.99 -0.10 16.01 16 10 O -0.57 -18.74 14.60 5.19 0.08 -18.67 16 11 C -0.54 -15.42 8.74 -35.63 -0.31 -15.73 16 12 H 0.07 1.91 5.99 -52.49 -0.31 1.59 16 13 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 14 N -0.77 -23.20 11.83 55.55 0.66 -22.55 16 15 Si 0.91 20.26 29.56 -169.99 -5.02 15.23 16 16 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 19 O -0.16 -3.49 10.65 5.72 0.06 -3.43 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 24 H 0.14 2.08 8.06 -52.48 -0.42 1.66 16 25 H 0.09 1.98 7.42 -51.93 -0.39 1.59 16 26 H 0.09 1.40 7.89 -51.93 -0.41 0.99 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.43 6.09 -51.93 -0.32 1.12 16 29 H 0.04 0.64 7.89 -51.93 -0.41 0.23 16 30 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 267.36 15.07 4.03 4.03 Total: -1.00 -35.83 267.36 -5.15 -40.98 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.51 Total: 0.76 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.92 Total: -0.84 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.13 Total: -38.06 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.14 Total: -22.09 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -35.83 -5.15 -40.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035699986.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.477 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds