Wall clock time and date at job start Mon Mar 30 2020 02:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36350 * 125.63247 * 264.69192 * 10 9 7 12 12 C 1.34855 * 108.21385 * 179.83132 * 11 10 9 13 13 C 1.40888 * 107.42006 * 0.42296 * 12 11 10 14 14 C 1.34852 * 107.41642 * 359.74024 * 13 12 11 15 15 C 1.50696 * 125.89076 * 180.02562 * 14 13 12 16 16 O 1.43751 * 109.63257 * 149.33346 * 15 14 13 17 17 C 1.44787 * 104.81542 * 215.80122 * 16 15 14 18 18 C 1.54914 * 101.71738 * 36.10740 * 17 16 15 19 19 O 1.43369 * 109.63401 * 29.96605 * 15 14 13 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 125.89168 * 359.97438 * 11 10 9 24 24 H 1.07999 * 126.28980 * 180.15885 * 12 11 10 25 25 H 1.08000 * 126.29445 * 179.73387 * 13 12 11 26 26 H 1.09002 * 109.62688 * 269.57570 * 15 14 13 27 27 H 1.08996 * 110.98132 * 277.99608 * 17 16 15 28 28 H 1.09002 * 111.00910 * 154.22135 * 17 16 15 29 29 H 1.09004 * 110.69154 * 206.03980 * 18 17 16 30 30 H 1.08999 * 110.69880 * 82.83445 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 4.3566 -3.2878 1.1169 12 6 4.7484 -4.5154 0.7194 13 6 4.6385 -4.5592 -0.6845 14 6 4.1782 -3.3587 -1.0910 15 6 3.9070 -2.9530 -2.5168 16 8 2.8322 -1.9991 -2.5514 17 6 2.1011 -2.3089 -3.7621 18 6 2.2084 -3.8536 -3.8079 19 8 3.5271 -4.1048 -3.2813 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.3280 -2.9314 2.1360 24 1 5.0884 -5.3163 1.3592 25 1 4.8787 -5.3998 -1.3186 26 1 4.8036 -2.5071 -2.9474 27 1 2.5785 -1.8586 -4.6324 28 1 1.0611 -1.9923 -3.6825 29 1 2.1278 -4.2151 -4.8331 30 1 1.4476 -4.3116 -3.1758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044231192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:20 Heat of formation + Delta-G solvation = -28.628160 kcal Electronic energy + Delta-G solvation = -15779.131464 eV Core-core repulsion = 13155.110710 eV Total energy + Delta-G solvation = -2624.020754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.61674 -39.31379 -34.55701 -33.33137 -31.37880 -30.60746 -27.83853 -27.18363 -23.80676 -22.84577 -22.42999 -19.62443 -18.58765 -17.16663 -16.78454 -16.56157 -15.71200 -14.98368 -14.29726 -14.16713 -13.45251 -13.18854 -12.92944 -12.76218 -12.40692 -12.11102 -11.96110 -11.48830 -11.34235 -11.09039 -10.86466 -10.62112 -10.12645 -9.77976 -9.55035 -9.31859 -8.66321 -7.66294 -7.33020 -6.14897 -4.12504 3.04685 3.20452 3.26596 3.28247 3.66844 3.71045 4.20082 4.31214 4.54264 4.97010 5.15330 5.21611 5.36267 5.59900 5.73328 5.83544 5.94223 6.02107 6.09649 6.32395 6.36271 6.56233 6.64797 6.96104 7.07295 7.43252 7.45313 7.80387 8.15913 8.18416 8.48538 8.91488 9.42955 10.98298 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.012865 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.410463 B = 2175.971139 C = 2923.972958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.077 3.923 3 Si 0.870 3.130 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.079 0.921 9 C 0.206 3.794 10 N -0.396 5.396 11 C -0.002 4.002 12 C -0.226 4.226 13 C -0.187 4.187 14 C -0.010 4.010 15 C 0.304 3.696 16 O -0.328 6.328 17 C 0.015 3.985 18 C 0.024 3.976 19 O -0.379 6.379 20 H 0.265 0.735 21 H 0.041 0.959 22 H 0.038 0.962 23 H 0.154 0.846 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 -4.154 -5.864 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.125 4.125 3 Si 0.697 3.303 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.097 0.903 9 C 0.086 3.914 10 N -0.067 5.067 11 C -0.137 4.137 12 C -0.251 4.251 13 C -0.212 4.212 14 C -0.125 4.125 15 C 0.207 3.793 16 O -0.247 6.247 17 C -0.062 4.062 18 C -0.052 4.052 19 O -0.299 6.299 20 H 0.075 0.925 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.172 0.828 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.180 -3.644 -5.750 9.194 hybrid contribution 0.155 0.953 -0.051 0.967 sum 6.336 -2.691 -5.801 9.002 Atomic orbital electron populations 1.69875 1.06028 1.26864 1.50587 1.24740 0.94705 0.98464 0.94635 0.86954 0.80279 0.84261 0.78798 1.19900 1.20940 1.19243 1.20990 0.87697 0.95095 1.50727 0.90325 1.20112 0.97292 0.76042 0.97945 1.44254 1.45050 1.12847 1.04577 1.21740 1.06997 0.93181 0.91757 1.20657 1.12280 0.97274 0.94865 1.20370 1.09684 0.96343 0.94797 1.20206 1.10432 0.93444 0.88435 1.21971 0.91293 0.78674 0.87321 1.89745 1.41765 1.52118 1.41086 1.24318 0.99492 0.93820 0.88554 1.24158 0.85424 0.96052 0.99569 1.88820 1.32424 1.40498 1.68191 0.92541 0.94132 0.94396 0.82832 0.85594 0.85512 0.89711 0.91544 0.87306 0.88796 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 20.73 27.47 -169.99 -4.67 16.06 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.51 -14.15 8.42 -34.44 -0.29 -14.44 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 9 C 0.21 4.99 4.09 -5.20 -0.02 4.97 16 10 N -0.40 -9.03 2.73 -113.82 -0.31 -9.34 16 11 C 0.00 -0.05 11.42 -16.74 -0.19 -0.24 16 12 C -0.23 -4.35 10.86 -39.78 -0.43 -4.78 16 13 C -0.19 -3.75 10.33 -39.78 -0.41 -4.16 16 14 C -0.01 -0.23 6.57 -81.79 -0.54 -0.76 16 15 C 0.30 5.93 4.37 36.00 0.16 6.09 16 16 O -0.33 -7.01 7.87 -59.04 -0.46 -7.47 16 17 C 0.02 0.24 7.95 38.17 0.30 0.55 16 18 C 0.02 0.37 8.07 38.17 0.31 0.68 16 19 O -0.38 -6.80 10.84 -59.04 -0.64 -7.44 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 21 H 0.04 0.98 6.64 -51.93 -0.34 0.64 16 22 H 0.04 0.90 7.17 -51.93 -0.37 0.52 16 23 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 24 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 25 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -31.52 256.23 -6.35 -37.87 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.69 Total: 2.37 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.21 Total: -10.04 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.46 Total: -35.21 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -1.10 Total: -14.91 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.52 -6.35 -37.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044231192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.238 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds