Wall clock time and date at job start Mon Mar 30 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.36350 * 125.63247 * 264.69192 * 10 9 7 12 12 C 1.34855 * 108.21385 * 179.83132 * 11 10 9 13 13 C 1.40888 * 107.42006 * 0.42296 * 12 11 10 14 14 C 1.34852 * 107.41642 * 359.74024 * 13 12 11 15 15 C 1.50696 * 125.89076 * 180.02562 * 14 13 12 16 16 O 1.43751 * 109.63257 * 149.33346 * 15 14 13 17 17 C 1.44787 * 104.81542 * 215.80122 * 16 15 14 18 18 C 1.54914 * 101.71738 * 36.10740 * 17 16 15 19 19 O 1.43369 * 109.63401 * 29.96605 * 15 14 13 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 125.89168 * 359.97438 * 11 10 9 24 24 H 1.07999 * 126.28980 * 180.15885 * 12 11 10 25 25 H 1.08000 * 126.29445 * 179.73387 * 13 12 11 26 26 H 1.09002 * 109.62688 * 269.57570 * 15 14 13 27 27 H 1.08996 * 110.98132 * 277.99608 * 17 16 15 28 28 H 1.09002 * 111.00910 * 154.22135 * 17 16 15 29 29 H 1.09004 * 110.69154 * 206.03980 * 18 17 16 30 30 H 1.08999 * 110.69880 * 82.83445 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 4.3566 -3.2878 1.1169 12 6 4.7484 -4.5154 0.7194 13 6 4.6385 -4.5592 -0.6845 14 6 4.1782 -3.3587 -1.0910 15 6 3.9070 -2.9530 -2.5168 16 8 2.8322 -1.9991 -2.5514 17 6 2.1011 -2.3089 -3.7621 18 6 2.2084 -3.8536 -3.8079 19 8 3.5271 -4.1048 -3.2813 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.3280 -2.9314 2.1360 24 1 5.0884 -5.3163 1.3592 25 1 4.8787 -5.3998 -1.3186 26 1 4.8036 -2.5071 -2.9474 27 1 2.5785 -1.8586 -4.6324 28 1 1.0611 -1.9923 -3.6825 29 1 2.1278 -4.2151 -4.8331 30 1 1.4476 -4.3116 -3.1758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044231192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:19 Heat of formation + Delta-G solvation = -49.323283 kcal Electronic energy + Delta-G solvation = -15780.028872 eV Core-core repulsion = 13155.110710 eV Total energy + Delta-G solvation = -2624.918162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.16794 -40.75796 -36.03175 -35.31613 -33.28323 -32.00429 -29.28409 -29.10487 -25.29330 -24.40963 -24.13875 -21.18689 -20.19293 -19.15776 -18.41008 -18.06795 -17.13136 -16.53388 -16.14829 -15.57852 -15.08479 -14.74769 -14.70111 -14.34549 -14.02522 -13.82763 -13.46311 -13.06052 -12.92097 -12.77771 -12.46235 -12.35235 -11.95807 -11.72869 -11.09767 -10.80802 -10.75280 -9.33165 -8.91172 -8.30583 -6.34102 1.34165 1.35092 1.42666 1.43993 2.17198 2.19665 2.30685 2.71770 3.01219 3.12038 3.71779 3.88534 4.09407 4.28149 4.33707 4.40386 4.44401 4.59148 4.68889 4.77877 4.81975 4.92731 5.04439 5.35651 5.44749 5.48743 6.02587 6.12122 6.30320 6.55860 6.61684 6.71605 7.25869 8.86374 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.012865 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.410463 B = 2175.971139 C = 2923.972958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.022 3.978 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.246 1.246 7 C -0.503 4.503 8 H 0.023 0.977 9 C 0.218 3.782 10 N -0.417 5.417 11 C -0.023 4.023 12 C -0.219 4.219 13 C -0.191 4.191 14 C -0.037 4.037 15 C 0.302 3.698 16 O -0.370 6.370 17 C 0.009 3.991 18 C 0.026 3.974 19 O -0.384 6.384 20 H 0.268 0.732 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.173 0.827 24 H 0.158 0.842 25 H 0.144 0.856 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.113 -3.899 -6.435 11.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.542 4.542 8 H 0.041 0.959 9 C 0.097 3.903 10 N -0.090 5.090 11 C -0.156 4.156 12 C -0.244 4.244 13 C -0.216 4.216 14 C -0.150 4.150 15 C 0.206 3.794 16 O -0.290 6.290 17 C -0.067 4.067 18 C -0.049 4.049 19 O -0.305 6.305 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.190 0.810 24 H 0.176 0.824 25 H 0.162 0.838 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.157 0.843 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.905 -3.424 -6.323 10.686 hybrid contribution -0.443 0.725 0.104 0.856 sum 7.463 -2.698 -6.218 10.082 Atomic orbital electron populations 1.70030 1.08054 1.28111 1.52086 1.25614 0.95488 1.02510 0.93999 0.85825 0.79564 0.78837 0.79387 1.19009 1.20603 1.16981 1.20947 0.89691 0.92997 1.50526 0.95867 1.19823 0.94536 0.77597 0.98330 1.44271 1.46348 1.12620 1.05721 1.22275 1.07256 0.93788 0.92290 1.21067 1.10893 0.97461 0.94946 1.20705 1.09049 0.96300 0.95586 1.20800 1.10855 0.94032 0.89343 1.22101 0.91586 0.78938 0.86731 1.89679 1.42856 1.52952 1.43471 1.24560 0.99027 0.94905 0.88202 1.24317 0.83888 0.95243 1.01491 1.88799 1.33513 1.40204 1.67965 0.92330 0.93731 0.93340 0.81014 0.82441 0.83834 0.87772 0.88189 0.88251 0.84250 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 2 C 0.02 1.24 5.47 84.66 0.46 1.71 16 3 Si 0.94 42.31 27.47 68.60 1.88 44.20 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.25 -10.15 6.54 99.48 0.65 -9.50 16 7 C -0.50 -28.74 8.42 25.60 0.22 -28.52 16 8 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 9 C 0.22 10.47 4.09 85.64 0.35 10.82 16 10 N -0.42 -18.86 2.73 -514.03 -1.40 -20.26 16 11 C -0.02 -0.94 11.42 83.21 0.95 0.01 16 12 C -0.22 -8.02 10.86 22.14 0.24 -7.78 16 13 C -0.19 -7.40 10.33 22.14 0.23 -7.18 16 14 C -0.04 -1.56 6.57 41.08 0.27 -1.29 16 15 C 0.30 11.57 4.37 71.23 0.31 11.88 16 16 O -0.37 -15.79 7.87 -126.22 -0.99 -16.79 16 17 C 0.01 0.29 7.95 72.64 0.58 0.86 16 18 C 0.03 0.76 8.07 72.64 0.59 1.35 16 19 O -0.38 -13.25 10.84 -126.22 -1.37 -14.61 16 20 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 21 H 0.04 2.11 6.64 -2.38 -0.02 2.09 16 22 H 0.05 2.21 7.17 -2.39 -0.02 2.20 16 23 H 0.17 5.98 8.06 -2.91 -0.02 5.95 16 24 H 0.16 4.63 8.06 -2.91 -0.02 4.60 16 25 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 26 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 28 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.14 2.73 8.14 -2.38 -0.02 2.71 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -69.04 256.23 3.68 -65.36 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 1.07 Total: 17.46 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.19 Total: -18.13 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -1.10 Total: -77.48 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -2.36 Total: -31.40 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.20 kcal Total: -69.04 3.68 -65.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044231192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.035 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds