Wall clock time and date at job start Mon Mar 30 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34515 * 125.79458 * 2 1 4 4 C 1.41378 * 106.84593 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.84200 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79162 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47230 * 19.99647 * 6 5 4 8 8 C 1.52999 * 109.47087 * 259.99632 * 6 5 4 9 9 N 1.46498 * 109.47047 * 139.99535 * 6 5 4 10 10 C 1.34777 * 119.99828 * 204.72109 * 9 6 5 11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 6 12 12 C 1.46373 * 120.00147 * 180.27610 * 10 9 6 13 13 H 1.08002 * 120.00141 * 0.02562 * 12 10 9 14 14 C 1.40050 * 120.00087 * 179.97438 * 12 10 9 15 15 N 1.30664 * 120.00145 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99913 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46768 * 60.00340 * 16 14 12 18 18 H 1.48498 * 109.47326 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47374 * 300.00617 * 16 14 12 20 20 O 1.34303 * 108.41745 * 0.26038 * 5 4 3 21 21 H 1.08998 * 109.47064 * 89.99730 * 1 2 3 22 22 H 1.08999 * 109.46751 * 209.99859 * 1 2 3 23 23 H 1.08997 * 109.46787 * 329.99147 * 1 2 3 24 24 H 1.08009 * 126.57050 * 0.02562 * 3 2 1 25 25 H 1.08003 * 126.57911 * 180.02562 * 4 3 2 26 26 H 1.08996 * 109.47245 * 179.97438 * 8 6 5 27 27 H 1.08995 * 109.47098 * 300.00096 * 8 6 5 28 28 H 1.09003 * 109.47054 * 59.99745 * 8 6 5 29 29 H 0.97001 * 120.00384 * 25.00556 * 9 6 5 30 30 H 0.96996 * 120.00325 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6504 -1.0993 0.3501 8 6 5.0194 -2.1480 -1.4227 9 7 4.5058 -2.7733 0.8852 10 6 5.5318 -3.4485 1.4401 11 8 6.6781 -3.1117 1.2084 12 6 5.2675 -4.5867 2.3217 13 1 4.2503 -4.8858 2.5271 14 6 6.3337 -5.2886 2.8979 15 7 7.5644 -4.9271 2.6489 16 14 5.9963 -6.7407 4.0235 17 1 5.2435 -7.7809 3.2773 18 1 7.2836 -7.3070 4.5003 19 1 5.1934 -6.2884 5.1879 20 8 2.2925 -1.0894 -0.0073 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5140 24 1 1.9665 2.1204 0.0004 25 1 4.5213 1.2433 -0.0004 26 1 5.8798 -2.8171 -1.4231 27 1 4.1396 -2.6865 -1.7747 28 1 5.2164 -1.3031 -2.0827 29 1 3.5922 -3.0418 1.0700 30 1 8.3029 -5.4129 3.0483 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049223401.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:58 Heat of formation + Delta-G solvation = -35.901694 kcal Electronic energy + Delta-G solvation = -14870.948553 eV Core-core repulsion = 12246.612395 eV Total energy + Delta-G solvation = -2624.336158 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.35379 -37.53017 -34.38089 -32.96452 -32.42356 -31.41579 -29.54580 -26.22654 -26.04635 -22.40767 -21.52350 -20.07137 -19.24925 -17.56680 -16.15773 -15.91654 -15.35909 -14.68323 -14.22194 -13.54454 -13.33593 -13.09219 -12.85697 -12.75878 -12.56435 -12.34913 -11.86686 -11.64113 -11.40587 -11.01401 -10.98243 -10.74682 -10.44440 -10.24353 -9.64491 -8.85216 -8.07580 -7.63568 -7.58052 -6.19079 -4.64666 1.94666 2.82750 3.12262 3.16821 3.21371 3.23503 4.10851 4.57386 4.74650 4.86068 5.11493 5.23725 5.40460 5.41268 5.64797 5.67212 5.83496 5.98097 6.02377 6.09473 6.23552 6.36997 6.47642 6.74493 6.77661 7.41378 7.44063 7.90711 8.05478 8.31981 9.02062 9.50140 10.58374 10.76301 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.041167 B = 0.006514 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.997751 B = 4297.127479 C = 4714.507842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.029 4.029 3 C -0.210 4.210 4 C -0.215 4.215 5 C 0.006 3.994 6 C 0.231 3.769 7 H 0.104 0.896 8 C -0.157 4.157 9 N -0.761 5.761 10 C 0.556 3.444 11 O -0.580 6.580 12 C -0.544 4.544 13 H 0.067 0.933 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.909 3.091 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.268 1.268 20 O -0.169 6.169 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.143 0.857 25 H 0.146 0.854 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.384 0.616 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.264 7.722 -4.652 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.230 4.230 4 C -0.235 4.235 5 C -0.045 4.045 6 C 0.125 3.875 7 H 0.122 0.878 8 C -0.215 4.215 9 N -0.417 5.417 10 C 0.361 3.639 11 O -0.463 6.463 12 C -0.581 4.581 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.733 3.267 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.193 1.193 20 O -0.066 6.066 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.161 0.839 25 H 0.164 0.836 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.216 0.784 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.297 7.638 -4.789 13.686 hybrid contribution -0.556 -0.528 0.621 0.987 sum -10.853 7.110 -4.168 13.627 Atomic orbital electron populations 1.20233 0.85514 1.03787 1.03081 1.22372 0.93911 0.84474 1.07148 1.21482 0.92769 0.99033 1.09686 1.21519 0.98105 0.93797 1.10034 1.23030 0.82889 0.94882 1.03712 1.19142 0.89902 0.86700 0.91757 0.87838 1.22207 1.02587 1.01215 0.95522 1.46253 1.10076 1.33256 1.52069 1.18225 0.83126 0.82716 0.79841 1.90597 1.20996 1.69668 1.65013 1.20840 0.93710 1.13859 1.29680 0.91436 1.25697 0.94504 0.97413 0.95553 1.70000 0.98954 1.35496 1.35157 0.86422 0.78229 0.81421 0.80611 1.19265 1.20529 1.19290 1.83954 1.16449 1.34891 1.71279 0.90505 0.90641 0.89728 0.83883 0.83571 0.90775 0.92921 0.92772 0.78381 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.42 36.00 0.38 -0.28 16 2 C -0.03 -0.41 7.32 -35.63 -0.26 -0.67 16 3 C -0.21 -2.94 10.81 -39.70 -0.43 -3.37 16 4 C -0.21 -3.41 10.80 -39.70 -0.43 -3.84 16 5 C 0.01 0.10 6.12 -35.63 -0.22 -0.11 16 6 C 0.23 4.68 3.03 -69.09 -0.21 4.47 16 7 H 0.10 2.25 7.57 -51.93 -0.39 1.86 16 8 C -0.16 -2.87 9.46 37.16 0.35 -2.52 16 9 N -0.76 -17.76 5.07 -56.35 -0.29 -18.04 16 10 C 0.56 15.95 7.71 -12.99 -0.10 15.85 16 11 O -0.58 -18.58 14.68 5.20 0.08 -18.51 16 12 C -0.54 -15.55 9.54 -35.63 -0.34 -15.89 16 13 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 14 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -23.03 11.83 55.55 0.66 -22.37 16 16 Si 0.91 20.27 29.56 -169.99 -5.02 15.25 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 O -0.17 -2.91 10.32 5.69 0.06 -2.85 16 21 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 25 H 0.15 2.06 8.06 -52.48 -0.42 1.64 16 26 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.38 8.31 8.30 -40.82 -0.34 7.97 16 30 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -33.85 270.46 -5.46 -39.31 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.66 Total: 7.14 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.35 Total: -3.99 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.37 Total: -40.42 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.14 Total: -21.36 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.85 -5.46 -39.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049223401.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.406 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds