Wall clock time and date at job start Mon Mar 30 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34515 * 125.79458 * 2 1 4 4 C 1.41378 * 106.84593 * 180.02562 * 3 2 1 5 5 C 1.34514 * 106.84200 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79162 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47230 * 19.99647 * 6 5 4 8 8 C 1.52999 * 109.47087 * 259.99632 * 6 5 4 9 9 N 1.46498 * 109.47047 * 139.99535 * 6 5 4 10 10 C 1.34777 * 119.99828 * 204.72109 * 9 6 5 11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 6 12 12 C 1.46373 * 120.00147 * 180.27610 * 10 9 6 13 13 H 1.08002 * 120.00141 * 0.02562 * 12 10 9 14 14 C 1.40050 * 120.00087 * 179.97438 * 12 10 9 15 15 N 1.30664 * 120.00145 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99913 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46768 * 60.00340 * 16 14 12 18 18 H 1.48498 * 109.47326 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47374 * 300.00617 * 16 14 12 20 20 O 1.34303 * 108.41745 * 0.26038 * 5 4 3 21 21 H 1.08998 * 109.47064 * 89.99730 * 1 2 3 22 22 H 1.08999 * 109.46751 * 209.99859 * 1 2 3 23 23 H 1.08997 * 109.46787 * 329.99147 * 1 2 3 24 24 H 1.08009 * 126.57050 * 0.02562 * 3 2 1 25 25 H 1.08003 * 126.57911 * 180.02562 * 4 3 2 26 26 H 1.08996 * 109.47245 * 179.97438 * 8 6 5 27 27 H 1.08995 * 109.47098 * 300.00096 * 8 6 5 28 28 H 1.09003 * 109.47054 * 59.99745 * 8 6 5 29 29 H 0.97001 * 120.00384 * 25.00556 * 9 6 5 30 30 H 0.96996 * 120.00325 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6379 -0.0019 7 1 5.6504 -1.0993 0.3501 8 6 5.0194 -2.1480 -1.4227 9 7 4.5058 -2.7733 0.8852 10 6 5.5318 -3.4485 1.4401 11 8 6.6781 -3.1117 1.2084 12 6 5.2675 -4.5867 2.3217 13 1 4.2503 -4.8858 2.5271 14 6 6.3337 -5.2886 2.8979 15 7 7.5644 -4.9271 2.6489 16 14 5.9963 -6.7407 4.0235 17 1 5.2435 -7.7809 3.2773 18 1 7.2836 -7.3070 4.5003 19 1 5.1934 -6.2884 5.1879 20 8 2.2925 -1.0894 -0.0073 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5140 24 1 1.9665 2.1204 0.0004 25 1 4.5213 1.2433 -0.0004 26 1 5.8798 -2.8171 -1.4231 27 1 4.1396 -2.6865 -1.7747 28 1 5.2164 -1.3031 -2.0827 29 1 3.5922 -3.0418 1.0700 30 1 8.3029 -5.4129 3.0483 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049223401.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:58 Heat of formation + Delta-G solvation = -59.818251 kcal Electronic energy + Delta-G solvation = -14871.985653 eV Core-core repulsion = 12246.612395 eV Total energy + Delta-G solvation = -2625.373258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.57213 -39.57714 -36.22441 -34.56853 -34.12083 -32.75360 -31.15929 -28.23028 -27.31563 -23.96825 -22.75663 -21.71008 -20.84281 -19.49978 -17.73671 -17.42133 -17.14005 -16.19814 -15.96998 -15.08993 -15.00872 -14.38779 -14.28359 -13.91954 -13.74137 -13.72537 -13.42305 -13.22692 -12.86958 -12.73806 -12.66017 -12.53329 -12.35064 -12.04812 -10.93394 -10.82951 -9.92752 -9.61584 -9.21071 -8.30710 -6.88377 0.72996 1.39718 1.43165 1.54967 1.65747 1.92793 2.24382 2.45353 3.02044 3.57047 3.64313 4.00506 4.12185 4.25850 4.33049 4.59337 4.69045 4.75563 4.78565 4.87523 4.92198 5.07280 5.18300 5.28806 5.30269 5.65476 5.83923 6.05622 6.20756 6.29791 6.84553 7.45892 8.44372 8.64313 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.041167 B = 0.006514 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.997751 B = 4297.127479 C = 4714.507842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.026 4.026 3 C -0.218 4.218 4 C -0.208 4.208 5 C -0.029 4.029 6 C 0.231 3.769 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.752 5.752 10 C 0.542 3.458 11 O -0.625 6.625 12 C -0.575 4.575 13 H 0.084 0.916 14 C 0.031 3.969 15 N -0.819 5.819 16 Si 0.998 3.002 17 H -0.254 1.254 18 H -0.272 1.272 19 H -0.256 1.256 20 O -0.188 6.188 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.111 0.889 24 H 0.176 0.824 25 H 0.158 0.842 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.393 0.607 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 7.956 -4.282 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 C -0.237 4.237 4 C -0.228 4.228 5 C -0.079 4.079 6 C 0.126 3.874 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.406 5.406 10 C 0.346 3.654 11 O -0.512 6.512 12 C -0.611 4.611 13 H 0.102 0.898 14 C -0.185 4.185 15 N -0.448 5.448 16 Si 0.817 3.183 17 H -0.178 1.178 18 H -0.196 1.196 19 H -0.180 1.180 20 O -0.085 6.085 21 H 0.114 0.886 22 H 0.096 0.904 23 H 0.129 0.871 24 H 0.193 0.807 25 H 0.176 0.824 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.226 0.774 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.767 7.901 -4.444 15.658 hybrid contribution 0.105 -0.476 0.451 0.664 sum -12.662 7.425 -3.993 15.212 Atomic orbital electron populations 1.20493 0.82090 1.05231 1.04772 1.23378 0.95768 0.83697 1.04747 1.21861 0.91523 1.00673 1.09617 1.21854 0.99808 0.93152 1.07951 1.22478 0.82762 0.94914 1.07773 1.19070 0.90766 0.85853 0.91722 0.90255 1.22084 1.01492 1.01721 0.95157 1.45952 1.09347 1.33513 1.51769 1.18562 0.83349 0.83305 0.80139 1.90550 1.22956 1.71062 1.66672 1.21385 0.95015 1.14451 1.30297 0.89755 1.26953 0.93777 1.00764 0.96981 1.70160 1.00464 1.37496 1.36687 0.85064 0.78553 0.76625 0.78008 1.17845 1.19628 1.17967 1.83925 1.16270 1.36476 1.71852 0.88551 0.90361 0.87100 0.80651 0.82447 0.93892 0.92074 0.89850 0.77420 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.42 71.23 0.74 -0.32 16 2 C -0.03 -0.67 7.32 24.83 0.18 -0.49 16 3 C -0.22 -5.48 10.81 22.19 0.24 -5.24 16 4 C -0.21 -6.35 10.80 22.19 0.24 -6.11 16 5 C -0.03 -1.03 6.12 24.83 0.15 -0.88 16 6 C 0.23 9.66 3.03 44.24 0.13 9.80 16 7 H 0.08 3.66 7.57 -2.39 -0.02 3.64 16 8 C -0.15 -5.49 9.46 71.98 0.68 -4.80 16 9 N -0.75 -36.20 5.07 -450.41 -2.28 -38.48 16 10 C 0.54 32.26 7.71 86.36 0.67 32.92 16 11 O -0.63 -42.14 14.68 -4.33 -0.06 -42.20 16 12 C -0.58 -33.44 9.54 24.83 0.24 -33.20 16 13 H 0.08 4.44 7.85 -2.91 -0.02 4.42 16 14 C 0.03 1.73 5.50 85.31 0.47 2.20 16 15 N -0.82 -50.48 11.83 21.84 0.26 -50.23 16 16 Si 1.00 41.42 29.56 68.60 2.03 43.45 16 17 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 20 O -0.19 -6.26 10.32 -2.55 -0.03 -6.29 16 21 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 25 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.39 17.32 8.30 -92.71 -0.77 16.55 16 30 H 0.28 15.38 8.29 -92.71 -0.77 14.61 16 Total: -1.00 -75.96 270.46 4.03 -71.93 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.38 Total: 27.94 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 3.74 Total: -6.12 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -2.02 Total: -88.71 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.09 Total: -48.49 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -75.96 4.03 -71.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049223401.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.109 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds