Wall clock time and date at job start Mon Mar 30 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34327 * 126.60090 * 2 1 4 4 C 1.50696 * 126.60508 * 359.95681 * 3 2 1 5 5 C 1.47961 * 106.79130 * 179.97438 * 3 2 1 6 6 O 1.21398 * 125.79330 * 179.73934 * 5 3 2 7 7 N 1.34517 * 108.41554 * 359.97438 * 5 3 2 8 8 C 1.46500 * 125.20967 * 179.97438 * 7 5 3 9 9 H 1.08997 * 109.47303 * 359.97438 * 8 7 5 10 10 C 1.53003 * 109.47038 * 240.00185 * 8 7 5 11 11 C 1.50698 * 109.47421 * 120.00015 * 8 7 5 12 12 H 1.08004 * 119.99647 * 34.99657 * 11 8 7 13 13 C 1.37877 * 120.00220 * 214.99487 * 11 8 7 14 14 N 1.31512 * 120.00039 * 184.90752 * 13 11 8 15 15 Si 1.86803 * 119.99968 * 4.91208 * 13 11 8 16 16 H 1.48501 * 109.47185 * 84.82001 * 15 13 11 17 17 H 1.48501 * 109.46983 * 204.82149 * 15 13 11 18 18 H 1.48498 * 109.46840 * 324.82184 * 15 13 11 19 19 C 1.34520 * 109.58843 * 359.97438 * 7 5 3 20 20 O 1.21399 * 125.79956 * 179.97438 * 19 7 5 21 21 H 1.09002 * 109.47145 * 89.99978 * 1 2 3 22 22 H 1.09002 * 109.47404 * 210.00384 * 1 2 3 23 23 H 1.09000 * 109.47051 * 330.00270 * 1 2 3 24 24 H 1.09002 * 109.47217 * 180.02562 * 4 3 2 25 25 H 1.09004 * 109.46637 * 299.99764 * 4 3 2 26 26 H 1.08999 * 109.47387 * 59.99823 * 4 3 2 27 27 H 1.09000 * 109.47153 * 294.91164 * 10 8 7 28 28 H 1.08998 * 109.47139 * 54.91536 * 10 8 7 29 29 H 1.09002 * 109.47298 * 174.91803 * 10 8 7 30 30 H 0.97007 * 120.00091 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0784 0.0000 4 6 1.8725 2.5211 -0.0009 5 6 3.6999 0.5770 0.0006 6 8 4.7017 1.2628 -0.0037 7 7 3.6672 -0.7678 0.0016 8 6 4.8433 -1.6414 0.0019 9 1 5.7477 -1.0331 0.0008 10 6 4.8224 -2.5253 -1.2468 11 6 4.8233 -2.5104 1.2329 12 1 3.8830 -2.8665 1.6272 13 6 6.0053 -2.8508 1.8557 14 7 5.9966 -3.6865 2.8711 15 14 7.6192 -2.1250 1.2573 16 1 7.8295 -0.7977 1.8892 17 1 8.7364 -3.0313 1.6257 18 1 7.5746 -1.9690 -0.2188 19 6 2.3893 -1.1878 0.0021 20 8 2.0221 -2.3450 0.0026 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 2.7513 3.1659 -0.0011 25 1 1.2762 2.7200 -0.8914 26 1 1.2750 2.7209 0.8886 27 1 3.9655 -3.1975 -1.2018 28 1 4.7457 -1.8979 -2.1348 29 1 5.7409 -3.1103 -1.2934 30 1 6.8282 -3.9257 3.3096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070800705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:03 Heat of formation + Delta-G solvation = -38.621457 kcal Electronic energy + Delta-G solvation = -15520.375571 eV Core-core repulsion = 12895.921475 eV Total energy + Delta-G solvation = -2624.454096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.58380 -37.93431 -35.69299 -35.21360 -32.72301 -30.76028 -29.79606 -26.30130 -25.34021 -23.73656 -21.49749 -19.66002 -18.93722 -17.00989 -16.32999 -15.81419 -15.08195 -14.99216 -14.02998 -13.50338 -13.40794 -13.36557 -13.19511 -12.71442 -12.57850 -12.53836 -12.26448 -12.23107 -11.77820 -11.33598 -10.87215 -10.76394 -9.98196 -9.97660 -9.71780 -9.26918 -9.14542 -8.70852 -8.56554 -6.24355 -4.28090 0.53739 2.98977 3.12442 3.27767 3.30567 3.32878 3.57112 4.11550 4.27567 4.58268 5.07346 5.09738 5.23211 5.47629 5.57848 5.63715 5.68310 5.89861 5.91184 6.13163 6.18513 6.27908 6.40117 6.49357 6.88386 7.03588 7.35213 7.63562 7.88850 8.27768 8.46388 8.85041 9.33970 10.87310 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033439 B = 0.010339 C = 0.009058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.150904 B = 2707.612754 C = 3090.312958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.133 4.133 3 C -0.141 4.141 4 C -0.091 4.091 5 C 0.545 3.455 6 O -0.480 6.480 7 N -0.562 5.562 8 C 0.230 3.770 9 H 0.063 0.937 10 C -0.152 4.152 11 C -0.527 4.527 12 H 0.086 0.914 13 C 0.082 3.918 14 N -0.882 5.882 15 Si 0.870 3.130 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.550 3.450 20 O -0.451 6.451 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 9.921 -6.671 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C -0.145 4.145 4 C -0.148 4.148 5 C 0.334 3.666 6 O -0.353 6.353 7 N -0.302 5.302 8 C 0.133 3.867 9 H 0.081 0.919 10 C -0.210 4.210 11 C -0.565 4.565 12 H 0.104 0.896 13 C -0.123 4.123 14 N -0.518 5.518 15 Si 0.696 3.304 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.187 1.187 19 C 0.337 3.663 20 O -0.322 6.322 21 H 0.100 0.900 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.205 9.452 -6.524 14.114 hybrid contribution 1.051 0.219 -0.093 1.077 sum -7.154 9.670 -6.617 13.729 Atomic orbital electron populations 1.20398 0.87653 1.03760 1.02990 1.23191 0.97621 0.93521 0.99428 1.23061 0.93427 0.97302 1.00709 1.20384 1.02357 0.89437 1.02620 1.19196 0.89624 0.82750 0.75054 1.90694 1.37851 1.61823 1.44981 1.47537 1.09605 1.07910 1.65166 1.19557 0.82157 0.88445 0.96561 0.91945 1.22248 1.02942 0.99983 0.95852 1.21083 0.96028 1.30093 1.09275 0.89561 1.24970 0.98862 0.94304 0.94183 1.69882 1.27969 1.32420 1.21506 0.86962 0.83480 0.79828 0.80133 1.19447 1.20760 1.18700 1.18981 0.82852 0.88927 0.75541 1.90718 1.79117 1.20028 1.42308 0.90005 0.90093 0.90485 0.90338 0.90253 0.90142 0.91665 0.95454 0.91794 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.22 36.00 0.37 -0.61 16 2 C -0.13 -2.04 6.38 -102.02 -0.65 -2.69 16 3 C -0.14 -2.14 6.38 -102.02 -0.65 -2.79 16 4 C -0.09 -0.95 10.01 36.00 0.36 -0.59 16 5 C 0.55 11.10 8.03 -12.39 -0.10 11.00 16 6 O -0.48 -10.77 17.50 5.46 0.10 -10.67 16 7 N -0.56 -12.64 2.52 -111.66 -0.28 -12.93 16 8 C 0.23 5.76 2.47 -69.08 -0.17 5.58 16 9 H 0.06 1.60 4.80 -51.93 -0.25 1.35 16 10 C -0.15 -3.40 9.13 37.16 0.34 -3.06 16 11 C -0.53 -15.15 8.72 -34.44 -0.30 -15.45 16 12 H 0.09 2.75 7.29 -52.48 -0.38 2.37 16 13 C 0.08 2.36 5.47 -17.82 -0.10 2.27 16 14 N -0.88 -26.77 13.96 55.43 0.77 -26.00 16 15 Si 0.87 21.55 26.99 -169.99 -4.59 16.96 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.26 -6.19 6.82 56.52 0.39 -5.80 16 19 C 0.55 11.40 7.35 -12.39 -0.09 11.31 16 20 O -0.45 -10.49 15.90 5.45 0.09 -10.40 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.50 7.09 -51.93 -0.37 1.13 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 264.48 15.07 3.99 3.99 Total: -1.00 -33.03 264.48 -4.44 -37.48 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.52 Total: -3.41 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.99 Total: 4.99 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.49 Total: -38.92 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.18 Total: -21.07 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.59 Total: 16.96 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.03 -4.44 -37.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.144 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds