Wall clock time and date at job start Mon Mar 30 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34327 * 126.60090 * 2 1 4 4 C 1.50696 * 126.60508 * 359.95681 * 3 2 1 5 5 C 1.47961 * 106.79130 * 179.97438 * 3 2 1 6 6 O 1.21398 * 125.79330 * 179.73934 * 5 3 2 7 7 N 1.34517 * 108.41554 * 359.97438 * 5 3 2 8 8 C 1.46500 * 125.20967 * 179.97438 * 7 5 3 9 9 H 1.08997 * 109.47303 * 359.97438 * 8 7 5 10 10 C 1.53003 * 109.47038 * 240.00185 * 8 7 5 11 11 C 1.50698 * 109.47421 * 120.00015 * 8 7 5 12 12 H 1.08004 * 119.99647 * 34.99657 * 11 8 7 13 13 C 1.37877 * 120.00220 * 214.99487 * 11 8 7 14 14 N 1.31512 * 120.00039 * 184.90752 * 13 11 8 15 15 Si 1.86803 * 119.99968 * 4.91208 * 13 11 8 16 16 H 1.48501 * 109.47185 * 84.82001 * 15 13 11 17 17 H 1.48501 * 109.46983 * 204.82149 * 15 13 11 18 18 H 1.48498 * 109.46840 * 324.82184 * 15 13 11 19 19 C 1.34520 * 109.58843 * 359.97438 * 7 5 3 20 20 O 1.21399 * 125.79956 * 179.97438 * 19 7 5 21 21 H 1.09002 * 109.47145 * 89.99978 * 1 2 3 22 22 H 1.09002 * 109.47404 * 210.00384 * 1 2 3 23 23 H 1.09000 * 109.47051 * 330.00270 * 1 2 3 24 24 H 1.09002 * 109.47217 * 180.02562 * 4 3 2 25 25 H 1.09004 * 109.46637 * 299.99764 * 4 3 2 26 26 H 1.08999 * 109.47387 * 59.99823 * 4 3 2 27 27 H 1.09000 * 109.47153 * 294.91164 * 10 8 7 28 28 H 1.08998 * 109.47139 * 54.91536 * 10 8 7 29 29 H 1.09002 * 109.47298 * 174.91803 * 10 8 7 30 30 H 0.97007 * 120.00091 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0784 0.0000 4 6 1.8725 2.5211 -0.0009 5 6 3.6999 0.5770 0.0006 6 8 4.7017 1.2628 -0.0037 7 7 3.6672 -0.7678 0.0016 8 6 4.8433 -1.6414 0.0019 9 1 5.7477 -1.0331 0.0008 10 6 4.8224 -2.5253 -1.2468 11 6 4.8233 -2.5104 1.2329 12 1 3.8830 -2.8665 1.6272 13 6 6.0053 -2.8508 1.8557 14 7 5.9966 -3.6865 2.8711 15 14 7.6192 -2.1250 1.2573 16 1 7.8295 -0.7977 1.8892 17 1 8.7364 -3.0313 1.6257 18 1 7.5746 -1.9690 -0.2188 19 6 2.3893 -1.1878 0.0021 20 8 2.0221 -2.3450 0.0026 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 2.7513 3.1659 -0.0011 25 1 1.2762 2.7200 -0.8914 26 1 1.2750 2.7209 0.8886 27 1 3.9655 -3.1975 -1.2018 28 1 4.7457 -1.8979 -2.1348 29 1 5.7409 -3.1103 -1.2934 30 1 6.8282 -3.9257 3.3096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070800705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:03 Heat of formation + Delta-G solvation = -62.045104 kcal Electronic energy + Delta-G solvation = -15521.391296 eV Core-core repulsion = 12895.921475 eV Total energy + Delta-G solvation = -2625.469822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.16871 -39.61782 -37.23783 -36.96539 -34.67776 -32.55653 -30.71664 -27.63707 -27.36242 -25.28957 -23.23140 -21.12723 -20.60182 -19.09908 -18.08636 -17.45538 -16.70408 -16.67402 -15.86477 -15.08157 -14.76957 -14.60831 -14.47958 -14.42192 -14.31611 -13.63918 -13.47353 -13.45056 -13.10244 -13.03071 -12.85746 -12.64807 -11.93674 -11.82677 -11.42068 -11.06223 -10.87949 -10.60468 -10.13658 -8.47675 -6.57601 -0.86051 1.22283 1.27387 1.35733 1.58068 1.60361 1.94253 2.18226 2.82997 2.90561 3.23516 4.01419 4.13962 4.15870 4.38822 4.49611 4.60875 4.65107 4.80480 4.86757 4.92373 4.98966 5.05384 5.17923 5.23152 5.28900 5.39595 5.84009 6.15363 6.30823 6.50148 6.73488 7.09221 8.68452 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033439 B = 0.010339 C = 0.009058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.150904 B = 2707.612754 C = 3090.312958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.087 4.087 5 C 0.532 3.468 6 O -0.506 6.506 7 N -0.584 5.584 8 C 0.229 3.771 9 H 0.058 0.942 10 C -0.144 4.144 11 C -0.535 4.535 12 H 0.037 0.963 13 C 0.028 3.972 14 N -0.929 5.929 15 Si 0.934 3.066 16 H -0.270 1.270 17 H -0.269 1.269 18 H -0.242 1.242 19 C 0.534 3.466 20 O -0.490 6.490 21 H 0.107 0.893 22 H 0.070 0.930 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 12.494 -8.062 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.126 4.126 4 C -0.143 4.143 5 C 0.323 3.677 6 O -0.381 6.381 7 N -0.324 5.324 8 C 0.130 3.870 9 H 0.076 0.924 10 C -0.202 4.202 11 C -0.573 4.573 12 H 0.055 0.945 13 C -0.173 4.173 14 N -0.567 5.567 15 Si 0.756 3.244 16 H -0.195 1.195 17 H -0.193 1.193 18 H -0.165 1.165 19 C 0.325 3.675 20 O -0.363 6.363 21 H 0.126 0.874 22 H 0.089 0.911 23 H 0.133 0.867 24 H 0.091 0.909 25 H 0.133 0.867 26 H 0.127 0.873 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.152 12.046 -7.931 17.081 hybrid contribution 1.277 -0.605 0.364 1.459 sum -7.874 11.441 -7.566 15.816 Atomic orbital electron populations 1.20614 0.83651 1.05094 1.04980 1.23308 0.99409 0.90088 0.99838 1.23249 0.89371 0.99787 1.00177 1.20625 1.02946 0.85207 1.05571 1.20108 0.91864 0.81811 0.73869 1.90666 1.39416 1.62030 1.46012 1.47492 1.09851 1.09030 1.66042 1.19348 0.83376 0.88488 0.95779 0.92382 1.22117 1.02539 0.99729 0.95828 1.21141 0.94274 1.30961 1.10933 0.94457 1.25823 1.02675 0.94486 0.94291 1.70010 1.29313 1.34114 1.23224 0.85948 0.78855 0.78855 0.80761 1.19516 1.19338 1.16535 1.20001 0.83167 0.90199 0.74174 1.90687 1.79585 1.22076 1.43984 0.87442 0.91130 0.86663 0.90935 0.86670 0.87299 0.93122 0.92632 0.91348 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 10.22 71.24 0.73 -0.78 16 2 C -0.12 -3.46 6.38 -18.18 -0.12 -3.57 16 3 C -0.12 -3.34 6.38 -18.18 -0.12 -3.46 16 4 C -0.09 -1.39 10.01 71.23 0.71 -0.68 16 5 C 0.53 21.23 8.03 86.86 0.70 21.93 16 6 O -0.51 -22.34 17.50 -3.40 -0.06 -22.40 16 7 N -0.58 -26.51 2.52 -744.15 -1.88 -28.38 16 8 C 0.23 11.64 2.47 44.25 0.11 11.75 16 9 H 0.06 2.97 4.80 -2.39 -0.01 2.96 16 10 C -0.14 -6.44 9.13 71.98 0.66 -5.78 16 11 C -0.53 -32.07 8.72 25.60 0.22 -31.85 16 12 H 0.04 2.54 7.29 -2.91 -0.02 2.52 16 13 C 0.03 1.66 5.47 84.66 0.46 2.12 16 14 N -0.93 -58.41 13.96 21.45 0.30 -58.12 16 15 Si 0.93 44.78 26.99 68.60 1.85 46.63 16 16 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.24 -10.71 6.82 99.48 0.68 -10.03 16 19 C 0.53 22.38 7.35 86.86 0.64 23.02 16 20 O -0.49 -23.69 15.90 -3.40 -0.05 -23.75 16 21 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.11 1.18 7.94 -2.39 -0.02 1.16 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 2.38 7.09 -2.39 -0.02 2.37 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -76.86 264.48 5.28 -71.58 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.12 Total: 1.74 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.00 Total: 12.69 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -1.58 Total: -86.50 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.11 Total: -46.15 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.85 Total: 46.63 kcal Total: -76.86 5.28 -71.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.534 kcal (2) G-P(sol) polarization free energy of solvation -76.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds