Wall clock time and date at job start Mon Mar 30 2020 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34324 * 126.60019 * 2 1 4 4 C 1.50702 * 126.60085 * 359.71583 * 3 2 1 5 5 C 1.47961 * 106.79424 * 179.73794 * 3 2 1 6 6 O 1.21396 * 125.79773 * 179.97438 * 5 3 2 7 7 N 1.34520 * 108.40996 * 0.02562 * 5 3 2 8 8 C 1.46501 * 125.20701 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47321 * 89.99604 * 8 7 5 10 10 C 1.50691 * 109.47287 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00307 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00183 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99822 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00419 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47274 * 89.99985 * 14 12 10 16 16 H 1.48497 * 109.47247 * 210.00478 * 14 12 10 17 17 H 1.48505 * 109.46963 * 329.99977 * 14 12 10 18 18 C 1.34521 * 109.59101 * 359.97438 * 7 5 3 19 19 O 1.21398 * 125.79619 * 180.02562 * 18 7 5 20 20 H 1.08996 * 109.47507 * 90.00091 * 1 2 3 21 21 H 1.09007 * 109.46838 * 209.99987 * 1 2 3 22 22 H 1.09004 * 109.47500 * 329.99491 * 1 2 3 23 23 H 1.08999 * 109.47129 * 90.00328 * 4 3 2 24 24 H 1.08998 * 109.46823 * 209.99937 * 4 3 2 25 25 H 1.08999 * 109.47564 * 330.00289 * 4 3 2 26 26 H 1.08999 * 109.47489 * 210.00580 * 8 7 5 27 27 H 1.09001 * 109.46892 * 329.99913 * 8 7 5 28 28 H 1.08994 * 109.47196 * 300.00732 * 9 8 7 29 29 H 1.09000 * 109.46199 * 60.00010 * 9 8 7 30 30 H 0.96994 * 120.00313 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0784 0.0000 4 6 1.8724 2.5211 -0.0060 5 6 3.7000 0.5770 0.0065 6 8 4.7017 1.2628 0.0078 7 7 3.6672 -0.7678 0.0095 8 6 4.8433 -1.6413 0.0165 9 6 5.2466 -1.9420 1.4615 10 6 6.4560 -2.8410 1.4687 11 1 6.8935 -3.1652 0.5360 12 6 7.0040 -3.2498 2.6660 13 7 6.4709 -2.8555 3.8019 14 14 8.5035 -4.3636 2.6751 15 1 9.7357 -3.5349 2.6791 16 1 8.4779 -5.2184 3.8891 17 1 8.4890 -5.2232 1.4642 18 6 2.3892 -1.1878 0.0061 19 8 2.0221 -2.3450 0.0080 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3634 0.8899 0.5139 23 1 1.7633 2.8720 1.0202 24 1 2.6214 3.1245 -0.5186 25 1 0.9174 2.6102 -0.5238 26 1 4.6066 -2.5736 -0.4963 27 1 5.6678 -1.1446 -0.4950 28 1 5.4833 -1.0097 1.9741 29 1 4.4220 -2.4386 1.9728 30 1 6.8562 -3.1433 4.6442 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070800706.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:59 Heat of formation + Delta-G solvation = -45.414651 kcal Electronic energy + Delta-G solvation = -14949.311304 eV Core-core repulsion = 12324.562633 eV Total energy + Delta-G solvation = -2624.748671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.88586 -38.25851 -35.97750 -35.16920 -33.08509 -30.48991 -29.95583 -27.01152 -24.37707 -24.04677 -21.46044 -19.87253 -19.37559 -16.97165 -16.23219 -15.98252 -15.46328 -14.99224 -14.48136 -13.70739 -13.65284 -13.48879 -13.43444 -13.00565 -12.88220 -12.50668 -12.39450 -12.35253 -11.59366 -10.98563 -10.87348 -10.37943 -10.21227 -10.07432 -9.80238 -9.38435 -9.27592 -8.85554 -8.41524 -6.06049 -4.10383 0.27845 2.72139 2.83092 3.21064 3.31196 3.36865 3.40589 3.85455 4.32240 4.43012 4.87386 5.00875 5.30412 5.37442 5.43909 5.44892 5.52382 5.69098 5.76822 5.91552 6.01410 6.09967 6.26041 6.61103 7.06177 7.54168 7.54269 7.65087 7.88063 8.02473 8.27902 8.94652 9.53922 11.05682 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.042436 B = 0.006740 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.652868 B = 4153.133702 C = 4450.188019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.132 4.132 3 C -0.132 4.132 4 C -0.093 4.093 5 C 0.548 3.452 6 O -0.460 6.460 7 N -0.579 5.579 8 C 0.115 3.885 9 C 0.011 3.989 10 C -0.523 4.523 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.548 3.452 19 O -0.460 6.460 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.880 8.831 -7.835 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C -0.136 4.136 4 C -0.149 4.149 5 C 0.336 3.664 6 O -0.331 6.331 7 N -0.320 5.320 8 C -0.003 4.003 9 C -0.026 4.026 10 C -0.562 4.562 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.530 5.530 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C 0.336 3.664 19 O -0.331 6.331 20 H 0.101 0.899 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.412 8.476 -7.647 16.142 hybrid contribution 0.973 -0.710 0.227 1.225 sum -10.439 7.767 -7.420 14.978 Atomic orbital electron populations 1.20424 0.87303 1.03998 1.03200 1.23064 0.97715 0.92839 1.00009 1.23066 0.92988 0.97573 0.99971 1.20424 1.02036 0.89020 1.03446 1.19118 0.89860 0.82199 0.75245 1.90756 1.37750 1.61458 1.43162 1.47029 1.09522 1.08790 1.66666 1.22217 0.82982 0.91936 1.03173 1.19420 0.97100 0.97526 0.88603 1.20996 1.12399 1.30056 0.92763 0.92203 1.25010 0.97449 0.96316 0.95476 1.69974 1.40712 1.44980 0.97377 0.86480 0.82762 0.80478 0.77631 1.20511 1.21119 1.19713 1.19119 0.82855 0.89205 0.75244 1.90756 1.79103 1.20105 1.43156 0.89858 0.89975 0.90211 0.89683 0.90085 0.90263 0.89863 0.89869 0.95937 0.95926 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.07 36.01 0.36 -0.46 16 2 C -0.13 -1.75 6.38 -102.02 -0.65 -2.40 16 3 C -0.13 -1.74 6.38 -102.02 -0.65 -2.39 16 4 C -0.09 -0.83 10.07 36.01 0.36 -0.46 16 5 C 0.55 9.92 8.03 -12.39 -0.10 9.82 16 6 O -0.46 -9.49 17.74 5.46 0.10 -9.39 16 7 N -0.58 -11.37 2.64 -117.53 -0.31 -11.68 16 8 C 0.11 2.54 5.76 -4.04 -0.02 2.52 16 9 C 0.01 0.30 5.30 -27.89 -0.15 0.16 16 10 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 11 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 14 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.55 9.92 8.03 -12.39 -0.10 9.82 16 19 O -0.46 -9.49 17.74 5.46 0.10 -9.39 16 20 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.49 7.88 -51.93 -0.41 0.08 16 26 H 0.08 1.78 8.02 -51.93 -0.42 1.36 16 27 H 0.08 1.78 8.01 -51.93 -0.42 1.36 16 28 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 273.52 15.07 4.12 4.12 Total: -1.00 -33.75 273.52 -5.36 -39.12 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: -3.73 Total: -5.91 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.36 Total: 2.84 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.43 Total: -38.29 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.19 Total: -18.78 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.75 -5.36 -39.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800706.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.297 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds