Wall clock time and date at job start Mon Mar 30 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86799 * 120.00243 * 2 1 4 4 H 1.48492 * 109.47337 * 240.00068 * 3 2 1 5 5 H 1.48503 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47089 * 120.00091 * 3 2 1 7 7 C 1.39894 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00551 * 197.93826 * 7 2 1 9 9 C 1.41214 * 119.99451 * 17.93644 * 7 2 1 10 10 C 1.40853 * 120.18251 * 24.52568 * 9 7 2 11 11 C 1.36413 * 119.81107 * 180.02562 * 10 9 7 12 12 C 1.39336 * 120.18742 * 359.74441 * 11 10 9 13 13 O 1.35674 * 119.81978 * 180.27591 * 12 11 10 14 14 C 1.39289 * 120.36265 * 0.51513 * 12 11 10 15 15 C 1.50700 * 119.90925 * 179.76041 * 14 12 11 16 16 H 1.08999 * 109.47234 * 324.72603 * 15 14 12 17 17 N 1.46899 * 109.47455 * 204.72581 * 15 14 12 18 18 C 1.53004 * 109.47018 * 84.72088 * 15 14 12 19 19 O 1.42901 * 109.47242 * 185.00189 * 18 15 14 20 20 C 1.36459 * 120.18593 * 359.48540 * 14 12 11 21 21 H 0.97003 * 120.00310 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.09218 * 0.04156 * 10 9 7 23 23 H 1.08006 * 119.90946 * 180.02562 * 11 10 9 24 24 H 0.96702 * 114.00106 * 270.23255 * 13 12 11 25 25 H 1.00900 * 110.99666 * 299.99864 * 17 15 14 26 26 H 1.00891 * 111.00262 * 63.95057 * 17 15 14 27 27 H 1.08999 * 109.46902 * 65.00581 * 18 15 14 28 28 H 1.08997 * 109.47493 * 305.00647 * 18 15 14 29 29 H 0.96702 * 113.99775 * 180.02562 * 19 18 15 30 30 H 1.07998 * 120.09379 * 180.27636 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2124 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3536 -2.4045 -0.3777 10 6 0.2242 -2.3573 -1.2180 11 6 -0.4027 -3.5144 -1.5771 12 6 0.0745 -4.7409 -1.1196 13 8 -0.5514 -5.8875 -1.4860 14 6 1.1875 -4.7960 -0.2840 15 6 1.6917 -6.1278 0.2092 16 1 0.8472 -6.7954 0.3799 17 7 2.4276 -5.9378 1.4663 18 6 2.6225 -6.7407 -0.8391 19 8 3.0081 -8.0529 -0.4248 20 6 1.8262 -3.6478 0.0847 21 1 -0.4851 0.8400 0.0004 22 1 -0.1443 -1.4078 -1.5770 23 1 -1.2687 -3.4801 -2.2217 24 1 -1.2599 -6.1580 -0.8860 25 1 3.2160 -5.3222 1.3342 26 1 1.8184 -5.5942 2.1935 27 1 3.5105 -6.1176 -0.9452 28 1 2.1036 -6.7996 -1.7958 29 1 3.6003 -8.5024 -1.0431 30 1 2.6918 -3.6926 0.7290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072197677.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:43 Heat of formation + Delta-G solvation = -81.442029 kcal Electronic energy + Delta-G solvation = -15103.385302 eV Core-core repulsion = 12477.074366 eV Total energy + Delta-G solvation = -2626.310936 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.88149 -36.63635 -35.81913 -34.38211 -32.99900 -29.43211 -28.94440 -27.00180 -24.89334 -22.34351 -20.90179 -19.71550 -17.54602 -17.26582 -16.56758 -15.77662 -15.38850 -14.67692 -14.39159 -14.01597 -13.73759 -13.10644 -12.79078 -12.52611 -12.06351 -11.94178 -11.40146 -11.21514 -10.99368 -10.89455 -10.55648 -10.22083 -9.94128 -9.61401 -9.43350 -9.12057 -8.23706 -7.66428 -7.34886 -6.92293 -4.49593 2.54103 2.77338 2.97888 2.99351 3.06378 3.80871 4.35190 4.72152 5.10199 5.31953 5.48618 5.64619 5.77552 5.91469 6.11632 6.16293 6.33940 6.69247 6.88522 6.99932 7.10756 7.37823 7.42642 7.60373 7.81742 7.88215 7.94465 7.99948 8.03506 8.37314 8.59467 8.70298 8.90870 10.01471 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.037725 B = 0.007813 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.044279 B = 3583.084616 C = 4086.780404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.110 3.890 10 C -0.153 4.153 11 C -0.116 4.116 12 C -0.034 4.034 13 O -0.501 6.501 14 C -0.111 4.111 15 C 0.146 3.854 16 H 0.082 0.918 17 N -0.834 5.834 18 C 0.094 3.906 19 O -0.565 6.565 20 C -0.217 4.217 21 H 0.284 0.716 22 H 0.122 0.878 23 H 0.094 0.906 24 H 0.353 0.647 25 H 0.337 0.663 26 H 0.339 0.661 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.367 0.633 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -4.169 -0.762 4.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.107 3.893 10 C -0.173 4.173 11 C -0.135 4.135 12 C -0.079 4.079 13 O -0.308 6.308 14 C -0.113 4.113 15 C 0.034 3.966 16 H 0.100 0.900 17 N -0.363 5.363 18 C 0.016 3.984 19 O -0.369 6.369 20 C -0.237 4.237 21 H 0.095 0.905 22 H 0.139 0.861 23 H 0.113 0.887 24 H 0.205 0.795 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.212 0.788 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.864 -4.623 -0.732 5.038 hybrid contribution -0.059 1.832 -0.215 1.845 sum 1.805 -2.791 -0.947 3.456 Atomic orbital electron populations 1.69824 1.07665 1.29685 1.34159 1.25949 0.94765 1.01541 0.92091 0.86319 0.80163 0.79919 0.80128 1.18695 1.20196 1.18866 1.19551 0.98221 0.91254 1.39618 0.90245 1.17604 0.91100 0.91950 0.88620 1.21018 0.99223 0.96704 1.00325 1.20765 0.99561 0.92525 1.00657 1.17851 0.97995 0.84625 1.07433 1.84838 1.52034 1.41153 1.52735 1.20079 0.97583 0.94871 0.98787 1.20009 0.94996 0.92925 0.88709 0.89995 1.59069 1.12956 1.56548 1.07695 1.22145 0.96852 0.82917 0.96445 1.86553 1.69636 1.29846 1.50851 1.20442 1.03901 0.92060 1.07257 0.90547 0.86070 0.88747 0.79498 0.84946 0.84913 0.94217 0.92976 0.78775 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.59 10.96 55.54 0.61 -18.98 16 2 C 0.08 1.81 5.13 -17.34 -0.09 1.72 16 3 Si 0.91 17.93 29.60 -169.99 -5.03 12.90 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.60 9.04 -37.83 -0.34 -11.94 16 8 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 9 C 0.11 2.80 5.57 -106.80 -0.60 2.21 16 10 C -0.15 -3.87 8.64 -39.25 -0.34 -4.21 16 11 C -0.12 -2.71 9.92 -39.83 -0.40 -3.11 16 12 C -0.03 -0.75 6.70 -38.78 -0.26 -1.01 16 13 O -0.50 -9.88 12.61 -18.72 -0.24 -10.12 16 14 C -0.11 -2.39 5.03 -104.87 -0.53 -2.92 16 15 C 0.15 2.75 2.97 -68.86 -0.20 2.54 16 16 H 0.08 1.58 7.69 -51.93 -0.40 1.18 16 17 N -0.83 -14.61 8.77 -5.65 -0.05 -14.66 16 18 C 0.09 1.65 6.62 37.16 0.25 1.90 16 19 O -0.57 -9.14 13.61 -35.23 -0.48 -9.62 16 20 C -0.22 -5.01 8.97 -39.25 -0.35 -5.36 16 21 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 22 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 23 H 0.09 2.03 8.06 -52.48 -0.42 1.61 16 24 H 0.35 5.54 9.06 45.56 0.41 5.95 16 25 H 0.34 5.77 7.20 -39.29 -0.28 5.49 16 26 H 0.34 5.70 9.06 -39.30 -0.36 5.34 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.37 4.03 9.12 45.56 0.42 4.44 16 30 H 0.10 2.06 6.25 -52.49 -0.33 1.73 16 LS Contribution 260.54 15.07 3.93 3.93 Total: -1.00 -28.41 260.54 -5.80 -34.21 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -1.68 Total: 22.52 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.86 Total: -20.18 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.56 Total: -33.64 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.72 Total: -19.73 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.41 -5.80 -34.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072197677.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.231 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds