Wall clock time and date at job start Mon Mar 30 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86799 * 120.00243 * 2 1 4 4 H 1.48492 * 109.47337 * 240.00068 * 3 2 1 5 5 H 1.48503 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47089 * 120.00091 * 3 2 1 7 7 C 1.39894 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00551 * 197.93826 * 7 2 1 9 9 C 1.41214 * 119.99451 * 17.93644 * 7 2 1 10 10 C 1.40853 * 120.18251 * 24.52568 * 9 7 2 11 11 C 1.36413 * 119.81107 * 180.02562 * 10 9 7 12 12 C 1.39336 * 120.18742 * 359.74441 * 11 10 9 13 13 O 1.35674 * 119.81978 * 180.27591 * 12 11 10 14 14 C 1.39289 * 120.36265 * 0.51513 * 12 11 10 15 15 C 1.50700 * 119.90925 * 179.76041 * 14 12 11 16 16 H 1.08999 * 109.47234 * 324.72603 * 15 14 12 17 17 N 1.46899 * 109.47455 * 204.72581 * 15 14 12 18 18 C 1.53004 * 109.47018 * 84.72088 * 15 14 12 19 19 O 1.42901 * 109.47242 * 185.00189 * 18 15 14 20 20 C 1.36459 * 120.18593 * 359.48540 * 14 12 11 21 21 H 0.97003 * 120.00310 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.09218 * 0.04156 * 10 9 7 23 23 H 1.08006 * 119.90946 * 180.02562 * 11 10 9 24 24 H 0.96702 * 114.00106 * 270.23255 * 13 12 11 25 25 H 1.00900 * 110.99666 * 299.99864 * 17 15 14 26 26 H 1.00891 * 111.00262 * 63.95057 * 17 15 14 27 27 H 1.08999 * 109.46902 * 65.00581 * 18 15 14 28 28 H 1.08997 * 109.47493 * 305.00647 * 18 15 14 29 29 H 0.96702 * 113.99775 * 180.02562 * 19 18 15 30 30 H 1.07998 * 120.09379 * 180.27636 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2124 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3536 -2.4045 -0.3777 10 6 0.2242 -2.3573 -1.2180 11 6 -0.4027 -3.5144 -1.5771 12 6 0.0745 -4.7409 -1.1196 13 8 -0.5514 -5.8875 -1.4860 14 6 1.1875 -4.7960 -0.2840 15 6 1.6917 -6.1278 0.2092 16 1 0.8472 -6.7954 0.3799 17 7 2.4276 -5.9378 1.4663 18 6 2.6225 -6.7407 -0.8391 19 8 3.0081 -8.0529 -0.4248 20 6 1.8262 -3.6478 0.0847 21 1 -0.4851 0.8400 0.0004 22 1 -0.1443 -1.4078 -1.5770 23 1 -1.2687 -3.4801 -2.2217 24 1 -1.2599 -6.1580 -0.8860 25 1 3.2160 -5.3222 1.3342 26 1 1.8184 -5.5942 2.1935 27 1 3.5105 -6.1176 -0.9452 28 1 2.1036 -6.7996 -1.7958 29 1 3.6003 -8.5024 -1.0431 30 1 2.6918 -3.6926 0.7290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072197677.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:43 Heat of formation + Delta-G solvation = -105.059561 kcal Electronic energy + Delta-G solvation = -15104.409435 eV Core-core repulsion = 12477.074366 eV Total energy + Delta-G solvation = -2627.335069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57739 -38.03729 -37.52979 -35.90363 -34.72135 -31.25296 -30.60142 -28.50083 -26.69024 -23.96211 -22.68905 -21.37823 -19.17650 -18.96503 -18.02551 -17.30403 -17.06913 -16.22580 -16.01653 -15.64521 -15.35874 -14.55137 -14.41085 -14.19377 -13.76267 -13.57574 -13.07367 -12.84068 -12.64403 -12.51041 -12.14462 -11.85866 -11.68619 -11.16035 -10.92754 -10.86776 -9.75309 -9.44414 -9.15799 -8.70649 -6.37994 0.78347 0.95456 1.37355 1.46695 1.50294 2.17210 2.58629 3.37542 3.58063 3.68316 3.82523 4.19444 4.25865 4.35494 4.41343 4.77690 4.83494 4.90831 5.05492 5.21355 5.30868 5.58067 5.71609 5.95211 5.99399 6.17462 6.27389 6.52883 6.55175 6.82443 6.85470 6.96560 7.24288 8.25474 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.037725 B = 0.007813 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.044279 B = 3583.084616 C = 4086.780404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.492 4.492 8 H 0.081 0.919 9 C 0.080 3.920 10 C -0.177 4.177 11 C -0.125 4.125 12 C -0.029 4.029 13 O -0.501 6.501 14 C -0.107 4.107 15 C 0.149 3.851 16 H 0.082 0.918 17 N -0.829 5.829 18 C 0.102 3.898 19 O -0.575 6.575 20 C -0.221 4.221 21 H 0.290 0.710 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.378 0.622 25 H 0.340 0.660 26 H 0.343 0.657 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.391 0.609 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -4.810 -0.585 5.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.521 4.521 8 H 0.099 0.901 9 C 0.078 3.922 10 C -0.196 4.196 11 C -0.144 4.144 12 C -0.074 4.074 13 O -0.310 6.310 14 C -0.110 4.110 15 C 0.037 3.963 16 H 0.100 0.900 17 N -0.357 5.357 18 C 0.024 3.976 19 O -0.382 6.382 20 C -0.241 4.241 21 H 0.101 0.899 22 H 0.123 0.877 23 H 0.126 0.874 24 H 0.232 0.768 25 H 0.154 0.846 26 H 0.155 0.845 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.240 0.760 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.476 -5.300 -0.554 5.876 hybrid contribution -0.306 1.841 -0.281 1.887 sum 2.170 -3.459 -0.834 4.168 Atomic orbital electron populations 1.69875 1.09056 1.30895 1.34776 1.26772 0.95462 1.04617 0.91112 0.85251 0.78817 0.75572 0.80147 1.18539 1.19248 1.18183 1.19813 0.98566 0.92354 1.41352 0.90122 1.17950 0.91744 0.93185 0.89333 1.20959 1.00256 0.96761 1.01657 1.20966 0.99932 0.92607 1.00895 1.17945 0.98097 0.84901 1.06501 1.84755 1.52813 1.39836 1.53578 1.20352 0.96895 0.95865 0.97882 1.19989 0.95510 0.91328 0.89498 0.90046 1.59072 1.12917 1.56578 1.07174 1.21929 0.96551 0.83668 0.95471 1.86485 1.70469 1.29184 1.52032 1.20606 1.04292 0.91851 1.07307 0.89913 0.87708 0.87411 0.76807 0.84624 0.84479 0.93985 0.93456 0.76007 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.54 10.96 21.82 0.24 -41.30 16 2 C 0.04 1.75 5.13 85.24 0.44 2.19 16 3 Si 0.98 36.70 29.60 68.60 2.03 38.73 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.49 -25.39 9.04 23.40 0.21 -25.18 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 4.17 5.57 -21.28 -0.12 4.05 16 10 C -0.18 -9.13 8.64 22.48 0.19 -8.94 16 11 C -0.13 -5.84 9.92 22.11 0.22 -5.62 16 12 C -0.03 -1.25 6.70 22.79 0.15 -1.10 16 13 O -0.50 -18.59 12.61 -89.92 -1.13 -19.73 16 14 C -0.11 -4.50 5.03 -20.03 -0.10 -4.60 16 15 C 0.15 5.32 2.97 44.17 0.13 5.45 16 16 H 0.08 2.94 7.69 -2.39 -0.02 2.92 16 17 N -0.83 -27.38 8.77 -171.80 -1.51 -28.88 16 18 C 0.10 3.33 6.62 71.98 0.48 3.81 16 19 O -0.57 -16.93 13.61 -148.98 -2.03 -18.95 16 20 C -0.22 -10.14 8.97 22.49 0.20 -9.94 16 21 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 22 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 23 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 24 H 0.38 10.77 9.06 -74.06 -0.67 10.10 16 25 H 0.34 11.01 7.20 -89.69 -0.65 10.37 16 26 H 0.34 10.91 9.06 -89.70 -0.81 10.10 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.39 7.37 9.12 -74.06 -0.68 6.70 16 30 H 0.11 4.56 6.25 -2.91 -0.02 4.54 16 Total: -1.00 -59.83 260.54 -2.19 -62.01 By element: Atomic # 1 Polarization: 49.60 SS G_CDS: -1.59 Total: 48.00 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 1.81 Total: -39.88 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.27 Total: -70.19 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -3.16 Total: -38.68 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -59.83 -2.19 -62.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072197677.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.047 kcal (2) G-P(sol) polarization free energy of solvation -59.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds