Wall clock time and date at job start Mon Mar 30 2020 03:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47462 * 2 1 4 4 C 1.35169 * 125.60723 * 89.99751 * 3 2 1 5 5 C 1.40330 * 107.12532 * 180.02562 * 4 3 2 6 6 C 1.36674 * 106.70417 * 0.02562 * 5 4 3 7 7 C 1.46512 * 125.99537 * 179.97438 * 6 5 4 8 8 O 1.21743 * 120.00022 * 2.14916 * 7 6 5 9 9 N 1.34774 * 120.00095 * 182.14749 * 7 6 5 10 10 C 1.46503 * 119.99778 * 4.89247 * 9 7 6 11 11 C 1.36854 * 120.00035 * 185.15913 * 9 7 6 12 12 H 1.07995 * 119.99635 * 329.42694 * 11 9 7 13 13 C 1.39023 * 119.99732 * 149.42637 * 11 9 7 14 14 N 1.31384 * 120.00296 * 343.73534 * 13 11 9 15 15 Si 1.86802 * 119.99967 * 163.73172 * 13 11 9 16 16 H 1.48503 * 109.46741 * 60.00196 * 15 13 11 17 17 H 1.48496 * 109.46985 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47312 * 300.00111 * 15 13 11 19 19 O 1.33957 * 125.61315 * 270.33750 * 3 2 1 20 20 H 1.09001 * 109.47544 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47109 * 299.99786 * 1 2 3 22 22 H 1.09004 * 109.47406 * 59.99865 * 1 2 3 23 23 H 1.09004 * 109.46726 * 239.99950 * 2 1 3 24 24 H 1.09003 * 109.47138 * 120.00609 * 2 1 3 25 25 H 1.07992 * 126.43693 * 0.02638 * 4 3 2 26 26 H 1.07997 * 126.64671 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.47033 * 174.89239 * 10 9 7 28 28 H 1.09003 * 109.46845 * 294.89016 * 10 9 7 29 29 H 1.08998 * 109.47389 * 54.89316 * 10 9 7 30 30 H 0.96998 * 120.00222 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2947 2.1627 1.0990 5 6 2.7378 3.4177 0.6541 6 6 2.7229 3.3780 -0.7120 7 6 3.1077 4.4703 -1.6094 8 8 3.5201 5.5193 -1.1495 9 7 3.0052 4.3137 -2.9441 10 6 2.4093 3.0939 -3.4949 11 6 3.4625 5.2918 -3.7849 12 1 3.4411 6.3255 -3.4729 13 6 3.9547 4.9547 -5.0407 14 7 4.2814 3.7100 -5.3058 15 14 4.1515 6.2713 -6.3511 16 1 5.0897 7.3155 -5.8665 17 1 4.6914 5.6585 -7.5913 18 1 2.8306 6.8867 -6.6368 19 8 2.2864 2.1583 -1.0890 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.1840 1.8487 2.1263 26 1 3.0334 4.2530 1.2716 27 1 2.3295 3.1857 -4.5781 28 1 3.0386 2.2388 -3.2481 29 1 1.4167 2.9497 -3.0683 30 1 4.6244 3.4747 -6.1820 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082367201.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:27 Heat of formation + Delta-G solvation = -21.318017 kcal Electronic energy + Delta-G solvation = -15215.989870 eV Core-core repulsion = 12592.286107 eV Total energy + Delta-G solvation = -2623.703763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.06459 -38.14663 -34.83875 -34.00837 -32.27838 -31.69171 -28.51059 -26.31300 -24.98439 -23.49756 -21.46972 -20.51884 -19.35681 -17.15918 -16.51040 -15.89375 -15.27678 -14.83029 -14.40094 -14.06016 -13.67152 -13.05709 -12.83139 -12.45908 -12.37956 -12.23682 -11.82955 -11.49602 -11.41649 -11.35270 -10.96701 -10.78154 -10.44966 -10.42481 -9.44500 -9.05766 -8.77375 -7.92423 -7.64890 -6.46204 -4.00481 1.82374 2.87549 3.18786 3.20458 3.23677 3.34424 4.06238 4.27931 4.74945 4.93039 5.03904 5.14788 5.25620 5.43363 5.56349 5.71354 5.77851 5.89243 6.14497 6.25252 6.37956 6.42985 6.57059 6.72628 6.95480 7.13809 7.46119 7.53065 8.09797 8.39652 9.03621 9.25761 9.85351 10.58819 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.044093 B = 0.007590 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.869474 B = 3688.219854 C = 4154.900607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.022 4.022 4 C -0.215 4.215 5 C -0.167 4.167 6 C -0.024 4.024 7 C 0.512 3.488 8 O -0.571 6.571 9 N -0.421 5.421 10 C 0.102 3.898 11 C -0.310 4.310 12 H 0.101 0.899 13 C 0.034 3.966 14 N -0.865 5.865 15 Si 0.930 3.070 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.271 1.271 19 O -0.154 6.154 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.144 0.856 26 H 0.150 0.850 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 -8.121 5.902 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 C -0.074 4.074 4 C -0.234 4.234 5 C -0.188 4.188 6 C -0.077 4.077 7 C 0.300 3.700 8 O -0.457 6.457 9 N -0.137 5.137 10 C -0.042 4.042 11 C -0.438 4.438 12 H 0.119 0.881 13 C -0.171 4.171 14 N -0.502 5.502 15 Si 0.756 3.244 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.196 1.196 19 O -0.049 6.049 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.162 0.838 26 H 0.168 0.832 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.852 -7.815 5.577 11.244 hybrid contribution 0.228 0.408 -0.437 0.640 sum -5.624 -7.406 5.140 10.626 Atomic orbital electron populations 1.21785 0.94229 1.01892 1.02746 1.20027 0.96135 0.87875 1.03787 1.22609 1.04579 0.95273 0.84962 1.21382 1.08465 0.94654 0.98908 1.21724 1.05016 0.98761 0.93325 1.22944 1.04884 0.84871 0.95043 1.16664 0.85107 0.86010 0.82182 1.90689 1.52769 1.26757 1.75532 1.43491 1.49221 1.17534 1.03473 1.21614 0.94457 0.86758 1.01325 1.19636 1.39423 0.89460 0.95267 0.88121 1.25486 0.95010 0.97308 0.99296 1.69982 1.39197 1.17992 1.23055 0.85938 0.79030 0.80344 0.79100 1.19466 1.20769 1.19616 1.84279 1.64181 1.22548 1.33941 0.91951 0.92305 0.92136 0.90121 0.89295 0.83839 0.83186 0.89019 0.93288 0.95188 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.15 0.37 -1.15 16 2 C -0.04 -0.47 6.46 -27.89 -0.18 -0.66 16 3 C -0.02 -0.36 6.57 -35.40 -0.23 -0.59 16 4 C -0.21 -3.50 10.77 -39.89 -0.43 -3.93 16 5 C -0.17 -3.31 10.63 -39.36 -0.42 -3.73 16 6 C -0.02 -0.56 6.82 -36.81 -0.25 -0.81 16 7 C 0.51 13.82 7.59 -12.93 -0.10 13.72 16 8 O -0.57 -16.86 16.63 5.15 0.09 -16.78 16 9 N -0.42 -11.49 2.97 -123.75 -0.37 -11.85 16 10 C 0.10 2.44 7.81 59.85 0.47 2.90 16 11 C -0.31 -8.80 9.12 -15.02 -0.14 -8.93 16 12 H 0.10 2.93 7.54 -52.49 -0.40 2.53 16 13 C 0.03 0.91 4.89 -17.45 -0.09 0.83 16 14 N -0.87 -23.28 11.24 55.50 0.62 -22.66 16 15 Si 0.93 20.44 29.58 -169.99 -5.03 15.41 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 O -0.15 -3.14 7.44 4.90 0.04 -3.10 16 20 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 27 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 28 H 0.05 1.17 7.31 -51.93 -0.38 0.79 16 29 H 0.03 0.64 7.33 -51.93 -0.38 0.26 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 263.11 15.07 3.97 3.97 Total: -1.00 -31.49 263.11 -5.25 -36.74 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.56 Total: 0.63 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.00 Total: -2.35 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.26 Total: -34.51 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.12 Total: -19.88 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.49 -5.25 -36.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082367201.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.417 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds