Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 115.49494 * 2 1 4 4 C 1.52995 * 117.44577 * 145.38762 * 2 1 3 5 5 H 1.09002 * 120.10658 * 355.52246 * 4 2 1 6 6 C 1.51312 * 118.61038 * 197.12268 * 4 2 1 7 7 O 1.21225 * 125.40139 * 117.30484 * 6 4 2 8 8 N 1.33879 * 109.20542 * 297.32920 * 6 4 2 9 9 C 1.46497 * 122.76437 * 179.97438 * 8 6 4 10 10 C 1.50694 * 109.47115 * 89.99694 * 9 8 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99792 * 179.72330 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.33882 * 114.47022 * 0.26255 * 8 6 4 19 19 O 1.21233 * 125.39053 * 179.71325 * 18 8 6 20 20 C 1.51307 * 109.21165 * 359.58018 * 18 8 6 21 21 H 1.09000 * 118.23469 * 221.52171 * 20 18 8 22 22 H 1.09004 * 109.47343 * 274.60846 * 1 2 3 23 23 H 1.08995 * 109.47223 * 34.60965 * 1 2 3 24 24 H 1.08998 * 109.47116 * 154.60905 * 1 2 3 25 25 H 1.08999 * 109.46892 * 205.39639 * 3 2 1 26 26 H 1.09002 * 109.47269 * 325.38771 * 3 2 1 27 27 H 1.08996 * 109.47475 * 85.39147 * 3 2 1 28 28 H 1.08998 * 109.46734 * 329.99811 * 9 8 6 29 29 H 1.09002 * 109.47081 * 209.99582 * 9 8 6 30 30 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1886 1.3810 0.0000 4 6 2.2352 -1.1174 0.7712 5 1 1.6529 -1.8316 1.3536 6 6 3.6957 -0.9429 1.1260 7 8 4.1435 -0.8890 2.2512 8 7 4.4152 -0.8570 0.0002 9 6 5.8697 -0.6827 0.0002 10 6 6.5376 -2.0335 0.0007 11 1 5.9385 -2.9322 0.0005 12 6 7.9135 -2.1224 0.0002 13 7 8.4964 -3.3013 0.0061 14 14 8.9498 -0.5682 -0.0002 15 1 9.2248 -0.1562 1.3998 16 1 10.2329 -0.8290 -0.7006 17 1 8.2153 0.5163 -0.7001 18 6 3.6951 -0.9374 -1.1256 19 8 4.1423 -0.8780 -2.2509 20 6 2.2352 -1.1176 -0.7711 21 1 1.6469 -1.8268 -1.3533 22 1 -0.3634 0.0826 1.0244 23 1 -0.3633 0.8458 -0.5837 24 1 -0.3633 -0.9284 -0.4406 25 1 3.1829 1.3094 -0.4407 26 1 1.5816 2.0731 -0.5837 27 1 2.2705 1.7446 1.0243 28 1 6.1692 -0.1290 0.8901 29 1 6.1694 -0.1295 -0.8900 30 1 9.4644 -3.3638 0.0054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923372.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = -55.115158 kcal Electronic energy + Delta-G solvation = -15486.571848 eV Core-core repulsion = 12861.402532 eV Total energy + Delta-G solvation = -2625.169317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.48229 -39.55362 -38.64151 -36.69484 -34.88390 -31.89785 -29.72780 -28.42888 -26.69103 -25.12315 -22.97739 -21.78967 -19.52828 -19.13614 -18.30671 -17.50349 -17.24749 -16.37070 -15.77960 -15.49014 -15.37980 -15.24223 -14.68905 -14.22315 -13.99886 -13.83876 -13.56000 -13.38419 -13.08945 -12.65658 -12.40184 -12.34462 -11.92273 -11.68997 -11.36959 -11.14430 -10.96625 -10.90389 -10.61811 -8.48044 -6.57853 0.26293 1.25631 1.28931 1.38593 1.60953 1.71624 2.20559 2.23128 2.84568 3.05539 3.16712 3.23476 3.46684 3.88715 4.19249 4.40961 4.50711 4.58788 4.61159 4.63331 4.69582 4.85711 5.01918 5.06778 5.17146 5.19427 5.43553 5.95574 5.96543 6.34398 6.41167 6.76541 7.06619 8.68745 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.043124 B = 0.008521 C = 0.008329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.131278 B = 3285.234154 C = 3361.054423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.002 4.002 3 C -0.144 4.144 4 C -0.193 4.193 5 H 0.187 0.813 6 C 0.542 3.458 7 O -0.517 6.517 8 N -0.567 5.567 9 C 0.211 3.789 10 C -0.556 4.556 11 H 0.029 0.971 12 C 0.018 3.982 13 N -0.935 5.935 14 Si 0.949 3.051 15 H -0.258 1.258 16 H -0.268 1.268 17 H -0.247 1.247 18 C 0.542 3.458 19 O -0.518 6.518 20 C -0.193 4.193 21 H 0.188 0.812 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.026 0.974 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 9.790 0.013 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.003 4.003 3 C -0.201 4.201 4 C -0.214 4.214 5 H 0.204 0.796 6 C 0.333 3.667 7 O -0.391 6.391 8 N -0.307 5.307 9 C 0.091 3.909 10 C -0.594 4.594 11 H 0.047 0.953 12 C -0.181 4.181 13 N -0.573 5.573 14 Si 0.770 3.230 15 H -0.183 1.183 16 H -0.192 1.192 17 H -0.171 1.171 18 C 0.333 3.667 19 O -0.392 6.392 20 C -0.214 4.214 21 H 0.205 0.795 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.103 0.897 25 H 0.046 0.954 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.392 9.741 0.015 19.934 hybrid contribution 1.546 -0.323 0.006 1.580 sum -15.846 9.418 0.021 18.433 Atomic orbital electron populations 1.21523 0.85409 1.04977 1.04767 1.21996 0.97924 0.89043 0.91376 1.21758 0.99662 0.94909 1.03800 1.23884 0.93071 1.09370 0.95064 0.79558 1.20611 0.89837 0.73097 0.83176 1.90666 1.78543 1.47261 1.22661 1.46827 1.10758 1.63675 1.09411 1.19626 0.75700 0.97060 0.98545 1.21289 0.92796 0.91646 1.53639 0.95265 1.25859 0.98840 1.00478 0.92962 1.70020 1.11161 1.25906 1.50216 0.85695 0.78473 0.78963 0.79866 1.18281 1.19233 1.17091 1.20595 0.89857 0.73078 0.83178 1.90669 1.78568 1.47279 1.22695 1.24020 0.92997 1.09254 0.95102 0.79529 0.89116 0.89021 0.89729 0.95447 0.87561 0.90429 0.93551 0.93448 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.84 71.98 0.71 -0.26 16 2 C 0.00 -0.04 2.67 -52.18 -0.14 -0.18 16 3 C -0.14 -2.96 9.09 71.98 0.65 -2.31 16 4 C -0.19 -4.93 6.83 -10.93 -0.07 -5.01 16 5 H 0.19 3.52 8.14 -2.39 -0.02 3.50 16 6 C 0.54 21.72 7.14 87.99 0.63 22.35 16 7 O -0.52 -24.27 17.48 -2.86 -0.05 -24.32 16 8 N -0.57 -25.42 2.20 -760.74 -1.67 -27.09 16 9 C 0.21 11.05 4.38 85.63 0.37 11.43 16 10 C -0.56 -34.48 9.94 25.60 0.25 -34.23 16 11 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 12 C 0.02 1.12 5.47 84.66 0.46 1.58 16 13 N -0.93 -60.02 13.96 21.45 0.30 -59.72 16 14 Si 0.95 45.15 27.47 68.60 1.88 47.04 16 15 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 18 C 0.54 21.81 6.41 87.99 0.56 22.37 16 19 O -0.52 -24.45 17.47 -2.89 -0.05 -24.50 16 20 C -0.19 -4.95 6.73 -10.93 -0.07 -5.02 16 21 H 0.19 3.52 8.14 -2.39 -0.02 3.50 16 22 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 23 H 0.09 0.55 7.93 -2.39 -0.02 0.53 16 24 H 0.08 0.54 7.97 -2.39 -0.02 0.53 16 25 H 0.03 0.75 6.21 -2.39 -0.01 0.74 16 26 H 0.11 1.50 7.93 -2.39 -0.02 1.48 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 2.38 7.26 -2.39 -0.02 2.36 16 29 H 0.05 2.47 6.88 -2.39 -0.02 2.45 16 30 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -80.96 260.92 4.86 -76.10 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 1.09 Total: 1.76 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 3.36 Total: 10.73 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -1.37 Total: -86.81 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.10 Total: -48.82 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -80.96 4.86 -76.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923372.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.989 kcal (2) G-P(sol) polarization free energy of solvation -80.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds