Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46891 * 111.00420 * 2 1 4 4 C 1.50707 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.38364 * 119.95395 * 269.97657 * 4 3 2 6 6 C 1.38321 * 120.18207 * 180.02562 * 5 4 3 7 7 C 1.38055 * 120.09199 * 359.72315 * 6 5 4 8 8 C 1.39088 * 119.90788 * 0.57146 * 7 6 5 9 9 S 1.76194 * 120.09331 * 179.70091 * 8 7 6 10 10 C 1.76205 * 100.00144 * 265.23715 * 9 8 7 11 11 H 1.07999 * 119.99593 * 5.11622 * 10 9 8 12 12 C 1.38724 * 119.99821 * 185.12107 * 10 9 8 13 13 N 1.31628 * 120.00139 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99629 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47277 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47364 * 119.99725 * 14 12 10 17 17 H 1.48504 * 109.46864 * 239.99757 * 14 12 10 18 18 C 1.38017 * 119.95308 * 90.00151 * 4 3 2 19 19 H 1.09001 * 109.47671 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47556 * 300.00453 * 1 2 3 21 21 H 1.09011 * 109.46743 * 60.00232 * 1 2 3 22 22 H 1.00907 * 110.99423 * 123.95112 * 2 1 3 23 23 H 1.09007 * 109.47523 * 59.99832 * 3 2 1 24 24 H 1.08999 * 109.47226 * 299.99356 * 3 2 1 25 25 H 1.07998 * 119.90807 * 359.97150 * 5 4 3 26 26 H 1.08004 * 119.94989 * 179.97438 * 6 5 4 27 27 H 1.08002 * 120.04953 * 180.30452 * 7 6 5 28 28 H 0.96996 * 119.99576 * 180.02562 * 13 12 10 29 29 H 1.07996 * 120.04796 * 0.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5020 1.3310 0.0006 5 6 4.1921 1.3132 1.1997 6 6 5.5748 1.2768 1.2058 7 6 6.2719 1.2523 0.0144 8 6 5.5822 1.2762 -1.1932 9 16 6.4671 1.2530 -2.7166 10 6 6.5490 2.9815 -3.0493 11 1 6.1786 3.6893 -2.3226 12 6 7.0890 3.4329 -4.2447 13 7 7.5408 2.5701 -5.1302 14 14 7.1764 5.2652 -4.5971 15 1 6.6074 6.0175 -3.4502 16 1 8.5928 5.6638 -4.7974 17 1 6.3978 5.5709 -5.8242 18 6 4.1914 1.3124 -1.1949 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 1.8305 -0.5261 0.7815 23 1 1.6460 1.8948 0.8900 24 1 1.6461 1.8947 -0.8900 25 1 3.6497 1.3287 2.1335 26 1 6.1097 1.2634 2.1440 27 1 7.3514 1.2189 0.0200 28 1 7.9187 2.8858 -5.9659 29 1 3.6520 1.3272 -2.1304 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085536910.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = 15.590139 kcal Electronic energy + Delta-G solvation = -12365.113656 eV Core-core repulsion = 10185.763222 eV Total energy + Delta-G solvation = -2179.350434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.73487 -35.79606 -32.46855 -31.14260 -30.31309 -26.49042 -25.53022 -23.51770 -22.17529 -20.86456 -17.75387 -16.58337 -15.72620 -15.10202 -14.82109 -14.61296 -14.46043 -13.83448 -13.39445 -12.87378 -12.24996 -12.22015 -11.99916 -11.75132 -11.38935 -11.09645 -11.06833 -10.63828 -10.53823 -9.81205 -9.13189 -8.88549 -8.51703 -8.24997 -7.85462 -6.63900 -6.24633 -3.97221 1.73919 1.92143 3.20488 3.23235 3.30196 3.56030 4.04779 4.24756 4.54477 5.02638 5.11341 5.15087 5.32593 5.36687 5.49997 5.51330 5.55811 5.73575 5.78115 5.99305 6.10062 6.37346 6.53932 6.87883 6.92228 6.96725 7.16639 7.33092 7.47763 7.61377 8.37138 9.20886 10.82044 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.032398 B = 0.006933 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.047996 B = 4037.863076 C = 4320.727374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.103 3.897 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.135 4.135 7 C -0.081 4.081 8 C -0.098 4.098 9 S -0.044 6.044 10 C -0.516 4.516 11 H 0.075 0.925 12 C 0.071 3.929 13 N -0.871 5.871 14 Si 0.920 3.080 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.057 4.057 19 H 0.066 0.934 20 H 0.018 0.982 21 H 0.065 0.935 22 H 0.341 0.659 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.268 0.732 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -2.334 10.901 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.319 5.319 3 C -0.025 4.025 4 C -0.106 4.106 5 C -0.137 4.137 6 C -0.155 4.155 7 C -0.103 4.103 8 C -0.208 4.208 9 S 0.190 5.810 10 C -0.663 4.663 11 H 0.093 0.907 12 C -0.137 4.137 13 N -0.507 5.507 14 Si 0.746 3.254 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.079 4.079 19 H 0.085 0.915 20 H 0.037 0.963 21 H 0.084 0.916 22 H 0.159 0.841 23 H 0.052 0.948 24 H 0.098 0.902 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.142 0.858 28 H 0.078 0.922 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.635 -3.308 9.365 13.161 hybrid contribution -0.632 2.412 1.429 2.874 sum -9.267 -0.897 10.794 14.254 Atomic orbital electron populations 1.22205 0.87993 1.01739 1.00272 1.60407 1.07227 1.14105 1.50197 1.20862 0.91265 0.89508 1.00888 1.19689 0.94268 1.03091 0.93570 1.20894 0.94375 1.01762 0.96645 1.21045 0.94097 1.02600 0.97761 1.21705 0.99971 0.97010 0.91567 1.22803 0.96342 1.00887 1.00798 1.83548 1.68852 1.12144 1.16461 1.22876 1.47005 0.90318 1.06121 0.90691 1.25003 0.94763 0.99092 0.94862 1.70009 1.38392 1.34018 1.08238 0.86082 0.77999 0.82895 0.78397 1.19546 1.20520 1.20515 1.21580 0.93467 0.95622 0.97211 0.91486 0.96344 0.91632 0.84112 0.94842 0.90201 0.87259 0.86681 0.85756 0.92210 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 60.06 0.64 0.92 15 2 N -0.69 -8.73 6.84 -122.42 -0.84 -9.57 15 3 C 0.10 1.41 5.81 -4.98 -0.03 1.38 15 4 C -0.10 -1.73 5.39 -104.65 -0.56 -2.29 15 5 C -0.12 -1.80 9.70 -39.50 -0.38 -2.18 15 6 C -0.14 -2.19 10.04 -39.62 -0.40 -2.59 15 7 C -0.08 -1.59 9.80 -39.33 -0.39 -1.97 15 8 C -0.10 -2.17 5.46 -38.94 -0.21 -2.38 15 9 S -0.04 -1.18 21.41 -107.50 -2.30 -3.48 15 10 C -0.52 -14.79 9.46 30.91 0.29 -14.49 15 11 H 0.07 2.14 7.79 -52.49 -0.41 1.73 15 12 C 0.07 2.02 5.49 -17.46 -0.10 1.93 15 13 N -0.87 -25.73 13.22 55.49 0.73 -25.00 15 14 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 15 15 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 18 C -0.06 -1.16 9.45 -39.33 -0.37 -1.53 15 19 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 15 21 H 0.06 0.66 8.14 -51.92 -0.42 0.23 15 22 H 0.34 3.95 8.81 -39.29 -0.35 3.61 15 23 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 15 24 H 0.08 1.12 8.08 -51.93 -0.42 0.70 15 25 H 0.11 1.34 8.06 -52.49 -0.42 0.91 15 26 H 0.12 1.51 8.06 -52.48 -0.42 1.09 15 27 H 0.12 2.35 8.06 -52.49 -0.42 1.92 15 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 29 H 0.13 2.58 8.06 -52.49 -0.42 2.16 15 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -30.72 271.38 -8.53 -39.26 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.69 Total: 1.37 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -1.50 Total: -23.21 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.10 Total: -34.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.30 Total: -3.48 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.72 -8.53 -39.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085536910.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.846 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds