Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46891 * 111.00420 * 2 1 4 4 C 1.50707 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.38364 * 119.95395 * 269.97657 * 4 3 2 6 6 C 1.38321 * 120.18207 * 180.02562 * 5 4 3 7 7 C 1.38055 * 120.09199 * 359.72315 * 6 5 4 8 8 C 1.39088 * 119.90788 * 0.57146 * 7 6 5 9 9 S 1.76194 * 120.09331 * 179.70091 * 8 7 6 10 10 C 1.76205 * 100.00144 * 265.23715 * 9 8 7 11 11 H 1.07999 * 119.99593 * 5.11622 * 10 9 8 12 12 C 1.38724 * 119.99821 * 185.12107 * 10 9 8 13 13 N 1.31628 * 120.00139 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99629 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47277 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47364 * 119.99725 * 14 12 10 17 17 H 1.48504 * 109.46864 * 239.99757 * 14 12 10 18 18 C 1.38017 * 119.95308 * 90.00151 * 4 3 2 19 19 H 1.09001 * 109.47671 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47556 * 300.00453 * 1 2 3 21 21 H 1.09011 * 109.46743 * 60.00232 * 1 2 3 22 22 H 1.00907 * 110.99423 * 123.95112 * 2 1 3 23 23 H 1.09007 * 109.47523 * 59.99832 * 3 2 1 24 24 H 1.08999 * 109.47226 * 299.99356 * 3 2 1 25 25 H 1.07998 * 119.90807 * 359.97150 * 5 4 3 26 26 H 1.08004 * 119.94989 * 179.97438 * 6 5 4 27 27 H 1.08002 * 120.04953 * 180.30452 * 7 6 5 28 28 H 0.96996 * 119.99576 * 180.02562 * 13 12 10 29 29 H 1.07996 * 120.04796 * 0.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5020 1.3310 0.0006 5 6 4.1921 1.3132 1.1997 6 6 5.5748 1.2768 1.2058 7 6 6.2719 1.2523 0.0144 8 6 5.5822 1.2762 -1.1932 9 16 6.4671 1.2530 -2.7166 10 6 6.5490 2.9815 -3.0493 11 1 6.1786 3.6893 -2.3226 12 6 7.0890 3.4329 -4.2447 13 7 7.5408 2.5701 -5.1302 14 14 7.1764 5.2652 -4.5971 15 1 6.6074 6.0175 -3.4502 16 1 8.5928 5.6638 -4.7974 17 1 6.3978 5.5709 -5.8242 18 6 4.1914 1.3124 -1.1949 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 1.8305 -0.5261 0.7815 23 1 1.6460 1.8948 0.8900 24 1 1.6461 1.8947 -0.8900 25 1 3.6497 1.3287 2.1335 26 1 6.1097 1.2634 2.1440 27 1 7.3514 1.2189 0.0200 28 1 7.9187 2.8858 -5.9659 29 1 3.6520 1.3272 -2.1304 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085536910.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = -4.615380 kcal Electronic energy + Delta-G solvation = -12365.989833 eV Core-core repulsion = 10185.763222 eV Total energy + Delta-G solvation = -2180.226611 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.09844 -36.84204 -34.64154 -32.40031 -31.75443 -27.73783 -27.55982 -24.52863 -23.62155 -22.21260 -19.79292 -17.98994 -16.92698 -16.87743 -16.57795 -15.90723 -15.56769 -15.11545 -14.75422 -14.51502 -13.75325 -13.41909 -13.22380 -13.06673 -12.99475 -12.93434 -12.64185 -12.34992 -11.87685 -11.64201 -11.21917 -10.68103 -9.73708 -9.57441 -9.33081 -8.77562 -8.37462 -6.17507 0.28492 0.49485 1.31376 1.36736 1.48294 1.75135 2.25397 2.74820 2.94577 3.43043 3.52387 3.85087 4.03318 4.20968 4.30389 4.51834 4.57883 4.62048 4.67253 4.73055 5.00256 5.04897 5.14576 5.38364 5.50552 5.59356 5.67384 5.98021 6.11510 6.17369 6.46461 7.02056 8.69591 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.032398 B = 0.006933 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.047996 B = 4037.863076 C = 4320.727374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.707 5.707 3 C 0.108 3.892 4 C -0.096 4.096 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.099 4.099 8 C -0.122 4.122 9 S -0.106 6.106 10 C -0.533 4.533 11 H 0.065 0.935 12 C 0.018 3.982 13 N -0.907 5.907 14 Si 0.995 3.005 15 H -0.266 1.266 16 H -0.268 1.268 17 H -0.269 1.269 18 C -0.078 4.078 19 H 0.078 0.922 20 H 0.035 0.965 21 H 0.059 0.941 22 H 0.349 0.651 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.157 0.843 26 H 0.156 0.844 27 H 0.120 0.880 28 H 0.273 0.727 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.599 -1.401 13.468 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.339 5.339 3 C -0.020 4.020 4 C -0.098 4.098 5 C -0.120 4.120 6 C -0.142 4.142 7 C -0.120 4.120 8 C -0.234 4.234 9 S 0.128 5.872 10 C -0.680 4.680 11 H 0.084 0.916 12 C -0.187 4.187 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.190 1.190 16 H -0.193 1.193 17 H -0.194 1.194 18 C -0.100 4.100 19 H 0.097 0.903 20 H 0.053 0.947 21 H 0.078 0.922 22 H 0.167 0.833 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.174 0.826 26 H 0.174 0.826 27 H 0.138 0.862 28 H 0.083 0.917 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.051 -2.394 11.941 15.791 hybrid contribution -0.279 2.032 0.773 2.192 sum -10.331 -0.362 12.714 16.386 Atomic orbital electron populations 1.22243 0.86263 1.02761 1.00795 1.60341 1.08960 1.13537 1.51017 1.20803 0.89039 0.90477 1.01720 1.19989 0.96036 1.01168 0.92625 1.21413 0.94164 0.98640 0.97769 1.21447 0.94769 1.00235 0.97735 1.21748 1.00102 0.98141 0.91998 1.22536 0.96935 1.04889 0.99005 1.83448 1.70660 1.12195 1.20879 1.23075 1.47435 0.91003 1.06492 0.91626 1.26030 0.93941 1.04350 0.94371 1.70130 1.39050 1.36408 1.08778 0.84964 0.78545 0.76402 0.78440 1.19009 1.19333 1.19436 1.21456 0.92728 0.97574 0.98218 0.90288 0.94654 0.92182 0.83277 0.92093 0.91265 0.82565 0.82635 0.86226 0.91744 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.70 127.69 1.37 1.86 15 2 N -0.71 -16.14 6.84 -541.23 -3.70 -19.84 15 3 C 0.11 2.67 5.81 85.56 0.50 3.17 15 4 C -0.10 -2.99 5.39 -19.88 -0.11 -3.09 15 5 C -0.10 -2.66 9.70 22.32 0.22 -2.44 15 6 C -0.12 -3.55 10.04 22.25 0.22 -3.33 15 7 C -0.10 -3.84 9.80 22.43 0.22 -3.62 15 8 C -0.12 -5.63 5.46 22.69 0.12 -5.51 15 9 S -0.11 -5.98 21.41 -56.49 -1.21 -7.19 15 10 C -0.53 -31.77 9.46 67.94 0.64 -31.13 15 11 H 0.07 3.89 7.79 -2.91 -0.02 3.86 15 12 C 0.02 1.04 5.49 84.84 0.47 1.51 15 13 N -0.91 -55.20 13.22 21.63 0.29 -54.91 15 14 Si 0.99 44.78 29.55 68.60 2.03 46.81 15 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 16 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 18 C -0.08 -3.23 9.45 22.43 0.21 -3.01 15 19 H 0.08 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.03 0.50 8.14 -2.39 -0.02 0.48 15 21 H 0.06 1.09 8.14 -2.38 -0.02 1.07 15 22 H 0.35 6.94 8.81 -89.69 -0.79 6.15 15 23 H 0.06 1.19 8.08 -2.38 -0.02 1.17 15 24 H 0.07 1.85 8.08 -2.39 -0.02 1.83 15 25 H 0.16 2.75 8.06 -2.91 -0.02 2.73 15 26 H 0.16 3.28 8.06 -2.91 -0.02 3.26 15 27 H 0.12 4.61 8.06 -2.91 -0.02 4.59 15 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 29 H 0.10 4.57 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -69.55 271.38 1.61 -67.94 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.35 Total: 12.80 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 3.86 Total: -45.61 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -3.42 Total: -74.75 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -5.98 SS G_CDS: -1.21 Total: -7.19 kcal Total: -69.55 1.61 -67.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085536910.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.327 kcal (2) G-P(sol) polarization free energy of solvation -69.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds