Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48501 * 109.47021 * 239.99967 * 3 2 1 5 5 H 1.48496 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47223 * 120.00081 * 3 2 1 7 7 C 1.37882 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47047 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46961 * 180.02562 * 11 10 9 13 13 C 1.36421 * 124.81575 * 90.02177 * 12 11 10 14 14 C 1.34424 * 109.09093 * 179.97438 * 13 12 11 15 15 C 1.46746 * 106.37165 * 359.97438 * 14 13 12 16 16 C 1.47113 * 127.02481 * 179.73620 * 15 14 13 17 17 O 1.21542 * 120.00327 * 180.02562 * 16 15 14 18 18 O 1.34792 * 119.99742 * 0.02803 * 16 15 14 19 19 C 1.34634 * 124.80273 * 269.96778 * 12 11 10 20 20 H 0.96995 * 119.99987 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47242 * 60.00102 * 9 7 2 22 22 H 1.08999 * 109.47282 * 299.99596 * 9 7 2 23 23 H 1.08998 * 109.47161 * 59.99435 * 10 9 7 24 24 H 1.08999 * 109.46673 * 299.99777 * 10 9 7 25 25 H 1.08998 * 109.47707 * 59.99640 * 11 10 9 26 26 H 1.08999 * 109.47096 * 299.99389 * 11 10 9 27 27 H 1.08007 * 125.45474 * 359.93084 * 13 12 11 28 28 H 1.08002 * 126.81901 * 180.02562 * 14 13 12 29 29 H 0.96698 * 116.99400 * 180.02562 * 18 16 15 30 30 H 1.07998 * 125.89787 * 0.06607 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0033 12 7 2.4323 -6.1006 -0.0024 13 6 2.9365 -6.6935 1.1180 14 6 3.7776 -7.6771 0.7545 15 6 3.7902 -7.6892 -0.7129 16 6 4.5649 -8.5859 -1.5847 17 8 4.4786 -8.4830 -2.7927 18 8 5.3704 -9.5215 -1.0438 19 6 2.9329 -6.6845 -1.1075 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5563 -0.8919 22 1 0.6241 -2.5575 0.8880 23 1 2.8713 -3.6047 0.8890 24 1 2.8726 -3.6039 -0.8910 25 1 0.8546 -5.0442 -0.8939 26 1 0.8527 -5.0455 0.8860 27 1 2.6985 -6.4164 2.1345 28 1 4.3331 -8.3296 1.4118 29 1 5.8596 -10.0871 -1.6569 30 1 2.7028 -6.4124 -2.1270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085846382.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = -82.877369 kcal Electronic energy + Delta-G solvation = -14210.507745 eV Core-core repulsion = 11584.134569 eV Total energy + Delta-G solvation = -2626.373177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.21874 -40.57536 -36.90199 -36.49123 -34.53390 -32.06846 -30.18738 -28.50851 -25.80205 -24.17620 -22.26833 -21.48423 -20.58360 -19.00722 -18.57065 -18.14125 -16.68680 -16.51380 -16.41146 -15.74266 -15.52314 -14.77652 -14.52548 -14.11883 -13.82098 -13.66923 -13.22535 -13.01527 -12.66328 -12.64064 -12.51410 -12.43896 -11.66507 -11.61719 -11.52643 -11.29777 -10.56591 -9.64445 -9.34145 -8.22628 -6.32935 0.49902 1.40310 1.41770 1.48730 1.50423 1.78940 2.34825 2.39773 2.54564 3.11583 3.83782 3.95548 4.09421 4.16678 4.37544 4.44975 4.54479 4.79130 4.91846 5.02370 5.10456 5.17471 5.47716 5.65963 5.68843 5.74560 5.81322 6.10740 6.19405 6.29649 6.82932 7.16064 7.36537 8.88402 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.050239 B = 0.004563 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.197916 B = 6135.164455 C = 6302.505065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.109 4.109 11 C 0.104 3.896 12 N -0.428 5.428 13 C -0.020 4.020 14 C -0.154 4.154 15 C -0.265 4.265 16 C 0.564 3.436 17 O -0.571 6.571 18 O -0.506 6.506 19 C 0.081 3.919 20 H 0.264 0.736 21 H 0.001 0.999 22 H 0.005 0.995 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.193 0.807 28 H 0.168 0.832 29 H 0.428 0.572 30 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 -15.315 1.958 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.147 4.147 11 C -0.016 4.016 12 N -0.100 5.100 13 C -0.146 4.146 14 C -0.177 4.177 15 C -0.273 4.273 16 C 0.412 3.588 17 O -0.465 6.465 18 O -0.319 6.319 19 C -0.057 4.057 20 H 0.073 0.927 21 H 0.019 0.981 22 H 0.023 0.977 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.210 0.790 28 H 0.185 0.815 29 H 0.289 0.711 30 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.667 -14.667 1.989 15.849 hybrid contribution 0.526 0.697 -0.611 1.066 sum 6.193 -13.970 1.378 15.343 Atomic orbital electron populations 1.70050 1.07548 1.27905 1.51404 1.25871 0.95722 1.03033 0.94694 0.85591 0.78383 0.78581 0.79066 1.19546 1.20754 1.19260 1.21619 0.93412 0.92537 1.50920 0.92657 1.18931 0.94184 0.92088 0.95878 1.21778 0.98625 0.93035 1.01305 1.22220 0.90275 0.83169 1.05950 1.44124 1.33992 1.26068 1.05858 1.22335 1.01592 0.98160 0.92529 1.22254 1.02255 1.00991 0.92155 1.19706 1.09173 1.04162 0.94290 1.19921 0.75929 0.77758 0.85174 1.90856 1.66412 1.71821 1.17447 1.84547 1.56009 1.45817 1.45549 1.22283 0.96342 0.94181 0.92935 0.92674 0.98068 0.97678 0.92455 0.93224 0.88170 0.87246 0.79017 0.81503 0.71109 0.80240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -29.84 9.11 25.60 0.23 -29.61 16 8 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.11 -3.99 5.48 30.59 0.17 -3.82 16 11 C 0.10 2.88 6.00 86.38 0.52 3.40 16 12 N -0.43 -11.32 2.68 -523.56 -1.40 -12.73 16 13 C -0.02 -0.47 11.32 83.11 0.94 0.47 16 14 C -0.15 -3.66 11.00 23.62 0.26 -3.40 16 15 C -0.26 -7.38 6.33 -18.82 -0.12 -7.50 16 16 C 0.56 15.58 8.32 70.15 0.58 16.17 16 17 O -0.57 -19.01 17.71 19.70 0.35 -18.66 16 18 O -0.51 -10.11 13.33 -57.03 -0.76 -10.87 16 19 C 0.08 2.27 11.18 84.17 0.94 3.21 16 20 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 21 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 22 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 23 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.10 2.61 8.13 -2.39 -0.02 2.59 16 26 H 0.11 2.69 8.13 -2.39 -0.02 2.67 16 27 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.43 4.30 9.11 -74.06 -0.67 3.63 16 30 H 0.18 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -67.83 275.20 5.10 -62.73 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.47 Total: 7.29 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.14 Total: -18.88 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -1.12 Total: -66.77 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.41 Total: -29.53 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.83 5.10 -62.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085846382.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.144 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds