Wall clock time and date at job start Mon Mar 30 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48496 * 109.47061 * 270.00020 * 3 2 1 5 5 H 1.48505 * 109.46985 * 29.99758 * 3 2 1 6 6 H 1.48495 * 109.47256 * 149.99715 * 3 2 1 7 7 C 1.37881 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99581 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46840 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47051 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46824 * 180.02562 * 11 10 9 13 13 C 1.34956 * 125.63640 * 264.69177 * 12 11 10 14 14 C 1.35490 * 108.98421 * 179.87033 * 13 12 11 15 15 C 1.39799 * 107.84180 * 0.39108 * 14 13 12 16 16 C 1.37698 * 125.63359 * 85.00367 * 12 11 10 17 17 C 1.46493 * 126.26183 * 359.95397 * 16 12 11 18 18 O 1.21624 * 119.99537 * 180.02562 * 17 16 12 19 19 O 1.34891 * 120.00243 * 0.02562 * 17 16 12 20 20 H 0.97000 * 120.00001 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46979 * 60.00436 * 9 7 2 22 22 H 1.08999 * 109.47678 * 299.99537 * 9 7 2 23 23 H 1.09003 * 109.46645 * 60.00090 * 10 9 7 24 24 H 1.09002 * 109.47370 * 300.00357 * 10 9 7 25 25 H 1.08999 * 109.46886 * 60.00687 * 11 10 9 26 26 H 1.08999 * 109.47559 * 299.99918 * 11 10 9 27 27 H 1.08000 * 125.50839 * 0.02562 * 13 12 11 28 28 H 1.07995 * 126.07703 * 180.12310 * 14 13 12 29 29 H 1.08001 * 126.51427 * 179.76098 * 15 14 13 30 30 H 0.96700 * 117.00066 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4325 -6.1005 0.0005 13 6 2.8672 -6.7640 -1.0913 14 6 3.7400 -7.7254 -0.7045 15 6 3.8507 -7.6682 0.6880 16 6 3.0271 -6.6470 1.1158 17 6 2.8232 -6.2217 2.5027 18 8 3.4106 -6.7876 3.4049 19 8 1.9839 -5.2025 2.7792 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8720 -3.6042 0.8906 24 1 2.8721 -3.6043 -0.8894 25 1 0.8542 -5.0445 -0.8904 26 1 0.8534 -5.0451 0.8896 27 1 2.5695 -6.5599 -2.1092 28 1 4.2550 -8.4162 -1.3556 29 1 4.4641 -8.3027 1.3105 30 1 1.8815 -4.9580 3.7091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085846922.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:54 Heat of formation + Delta-G solvation = -60.660329 kcal Electronic energy + Delta-G solvation = -14819.550554 eV Core-core repulsion = 12194.140781 eV Total energy + Delta-G solvation = -2625.409773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.33849 -39.37731 -35.99542 -34.80583 -32.73992 -30.46445 -29.48656 -26.62599 -23.84554 -23.34090 -20.60368 -20.51082 -19.54919 -17.87838 -17.31217 -16.20094 -15.61027 -15.26521 -14.59266 -14.45940 -14.11678 -13.40985 -13.06590 -12.62732 -12.35964 -12.24898 -11.94980 -11.48845 -11.35806 -10.92036 -10.88947 -10.64762 -10.62759 -9.87806 -9.63003 -9.25430 -8.54957 -8.43235 -8.21964 -6.08375 -4.11032 1.38833 2.78688 2.94731 3.27268 3.27444 3.30877 3.33934 3.37805 4.39895 4.98115 5.08532 5.26592 5.28102 5.55529 5.57127 5.65598 5.89042 6.13089 6.21894 6.42381 6.57698 6.58909 6.83474 6.89805 7.13161 7.35119 7.54433 7.66611 7.89891 8.06191 8.31918 8.95089 9.53638 11.02852 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.006336 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.085529 B = 4418.355540 C = 4759.741370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.118 4.118 11 C 0.092 3.908 12 N -0.401 5.401 13 C 0.034 3.966 14 C -0.223 4.223 15 C -0.105 4.105 16 C -0.054 4.054 17 C 0.557 3.443 18 O -0.522 6.522 19 O -0.506 6.506 20 H 0.261 0.739 21 H 0.017 0.983 22 H 0.021 0.979 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.169 0.831 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -12.464 -0.116 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.156 4.156 11 C -0.028 4.028 12 N -0.073 5.073 13 C -0.105 4.105 14 C -0.247 4.247 15 C -0.131 4.131 16 C -0.164 4.164 17 C 0.403 3.597 18 O -0.412 6.412 19 O -0.318 6.318 20 H 0.071 0.929 21 H 0.035 0.965 22 H 0.039 0.961 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.187 0.813 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.009 -12.279 -0.216 12.644 hybrid contribution 0.362 1.180 0.517 1.338 sum 3.371 -11.099 0.301 11.603 Atomic orbital electron populations 1.69953 1.06043 1.26752 1.50660 1.25006 0.94858 0.99288 0.95171 0.86583 0.79872 0.83340 0.78170 1.20604 1.21140 1.19861 1.21181 0.93040 0.90862 1.50901 0.92698 1.19023 0.93714 0.90839 0.97496 1.21990 0.99712 0.92492 1.01380 1.22540 0.90778 0.84888 1.04557 1.44499 1.32424 1.25112 1.05305 1.22025 1.00211 0.96036 0.92236 1.20803 1.05371 1.03724 0.94778 1.21249 0.99438 0.97356 0.95106 1.19331 1.08603 1.03974 0.84530 1.19549 0.75666 0.76684 0.87842 1.90909 1.47900 1.55567 1.46782 1.84756 1.61209 1.49665 1.36134 0.92903 0.96488 0.96059 0.92332 0.92924 0.89268 0.88170 0.81339 0.83920 0.83614 0.72814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.12 -2.32 5.41 -26.73 -0.14 -2.46 16 11 C 0.09 1.47 5.39 -4.04 -0.02 1.45 16 12 N -0.40 -6.10 2.75 -113.04 -0.31 -6.41 16 13 C 0.03 0.44 11.33 -17.16 -0.19 0.24 16 14 C -0.22 -2.78 10.81 -39.98 -0.43 -3.21 16 15 C -0.11 -1.49 10.66 -39.09 -0.42 -1.91 16 16 C -0.05 -0.86 6.88 -82.00 -0.56 -1.42 16 17 C 0.56 8.98 8.29 34.06 0.28 9.26 16 18 O -0.52 -9.29 17.67 -19.36 -0.34 -9.63 16 19 O -0.51 -7.24 10.54 -41.01 -0.43 -7.67 16 20 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.21 7.76 -51.93 -0.40 0.81 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.09 1.28 8.12 -51.93 -0.42 0.86 16 26 H 0.10 1.61 6.46 -51.93 -0.34 1.28 16 27 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.41 4.02 9.11 45.56 0.42 4.44 16 LS Contribution 269.55 15.07 4.06 4.06 Total: -1.00 -32.15 269.55 -6.17 -38.32 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.82 Total: 1.17 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.04 Total: -10.72 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.43 Total: -31.85 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.77 Total: -17.30 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.15 -6.17 -38.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085846922.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.338 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds