Wall clock time and date at job start Mon Mar 30 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48496 * 109.47061 * 270.00020 * 3 2 1 5 5 H 1.48505 * 109.46985 * 29.99758 * 3 2 1 6 6 H 1.48495 * 109.47256 * 149.99715 * 3 2 1 7 7 C 1.37881 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99581 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46840 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47051 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46824 * 180.02562 * 11 10 9 13 13 C 1.34956 * 125.63640 * 264.69177 * 12 11 10 14 14 C 1.35490 * 108.98421 * 179.87033 * 13 12 11 15 15 C 1.39799 * 107.84180 * 0.39108 * 14 13 12 16 16 C 1.37698 * 125.63359 * 85.00367 * 12 11 10 17 17 C 1.46493 * 126.26183 * 359.95397 * 16 12 11 18 18 O 1.21624 * 119.99537 * 180.02562 * 17 16 12 19 19 O 1.34891 * 120.00243 * 0.02562 * 17 16 12 20 20 H 0.97000 * 120.00001 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46979 * 60.00436 * 9 7 2 22 22 H 1.08999 * 109.47678 * 299.99537 * 9 7 2 23 23 H 1.09003 * 109.46645 * 60.00090 * 10 9 7 24 24 H 1.09002 * 109.47370 * 300.00357 * 10 9 7 25 25 H 1.08999 * 109.46886 * 60.00687 * 11 10 9 26 26 H 1.08999 * 109.47559 * 299.99918 * 11 10 9 27 27 H 1.08000 * 125.50839 * 0.02562 * 13 12 11 28 28 H 1.07995 * 126.07703 * 180.12310 * 14 13 12 29 29 H 1.08001 * 126.51427 * 179.76098 * 15 14 13 30 30 H 0.96700 * 117.00066 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4325 -6.1005 0.0005 13 6 2.8672 -6.7640 -1.0913 14 6 3.7400 -7.7254 -0.7045 15 6 3.8507 -7.6682 0.6880 16 6 3.0271 -6.6470 1.1158 17 6 2.8232 -6.2217 2.5027 18 8 3.4106 -6.7876 3.4049 19 8 1.9839 -5.2025 2.7792 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8720 -3.6042 0.8906 24 1 2.8721 -3.6043 -0.8894 25 1 0.8542 -5.0445 -0.8904 26 1 0.8534 -5.0451 0.8896 27 1 2.5695 -6.5599 -2.1092 28 1 4.2550 -8.4162 -1.3556 29 1 4.4641 -8.3027 1.3105 30 1 1.8815 -4.9580 3.7091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085846922.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:54 Heat of formation + Delta-G solvation = -80.586846 kcal Electronic energy + Delta-G solvation = -14820.414633 eV Core-core repulsion = 12194.140781 eV Total energy + Delta-G solvation = -2626.273852 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.44443 -40.57397 -37.23407 -36.42706 -34.55413 -32.04556 -30.57485 -28.32952 -25.28045 -24.78084 -22.30966 -21.59667 -20.71849 -19.12951 -18.66647 -18.08110 -16.84832 -16.53810 -16.34273 -15.95360 -15.39699 -14.71922 -14.38678 -14.13926 -13.73095 -13.64768 -13.25117 -13.06415 -12.69503 -12.63454 -12.57306 -12.45682 -11.89700 -11.60485 -11.52806 -11.28127 -10.56318 -9.71200 -9.29156 -8.22066 -6.32176 0.22353 1.39433 1.39960 1.50829 1.73576 1.83921 2.15429 2.18582 2.40093 3.11846 3.81724 3.96575 4.17503 4.30150 4.43889 4.45987 4.62494 4.79073 4.96198 5.12675 5.13547 5.27526 5.48114 5.49674 5.68722 5.81458 5.82400 6.01889 6.21140 6.31093 6.83379 6.95007 7.36915 8.89216 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.006336 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.085529 B = 4418.355540 C = 4759.741370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.032 3.968 10 C -0.100 4.100 11 C 0.104 3.896 12 N -0.411 5.411 13 C 0.037 3.963 14 C -0.218 4.218 15 C -0.106 4.106 16 C -0.091 4.091 17 C 0.557 3.443 18 O -0.549 6.549 19 O -0.510 6.510 20 H 0.264 0.736 21 H 0.003 0.997 22 H 0.001 0.999 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.201 0.799 28 H 0.175 0.825 29 H 0.155 0.845 30 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -12.863 -1.262 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.138 4.138 11 C -0.016 4.016 12 N -0.084 5.084 13 C -0.100 4.100 14 C -0.241 4.241 15 C -0.133 4.133 16 C -0.200 4.200 17 C 0.404 3.596 18 O -0.441 6.441 19 O -0.324 6.324 20 H 0.073 0.927 21 H 0.021 0.979 22 H 0.019 0.981 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.128 0.872 26 H 0.114 0.886 27 H 0.218 0.782 28 H 0.192 0.808 29 H 0.172 0.828 30 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 3.830 -12.685 -1.356 13.320 hybrid contribution 0.110 1.261 0.845 1.522 sum 3.941 -11.424 -0.511 12.095 Atomic orbital electron populations 1.70061 1.07517 1.27800 1.51486 1.25860 0.95725 1.02966 0.94727 0.85542 0.78624 0.78924 0.78548 1.19661 1.20636 1.19286 1.21621 0.93294 0.92533 1.50779 0.92868 1.18878 0.94047 0.91910 0.95719 1.21667 0.98496 0.92964 1.00658 1.22234 0.90425 0.83490 1.05439 1.44411 1.32857 1.25256 1.05860 1.22707 0.99241 0.95168 0.92933 1.21208 1.04872 1.03797 0.94208 1.21586 0.98664 0.96677 0.96349 1.19556 1.10320 1.05493 0.84634 1.19709 0.75321 0.76507 0.88051 1.90881 1.49108 1.56556 1.47562 1.84728 1.60709 1.49141 1.37794 0.92678 0.97862 0.98083 0.93715 0.92844 0.87231 0.88614 0.78232 0.80773 0.82784 0.70936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 13.29 21.45 0.28 -54.37 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.10 -3.88 5.41 30.59 0.17 -3.72 16 11 C 0.10 3.22 5.39 86.38 0.47 3.69 16 12 N -0.41 -11.77 2.75 -511.55 -1.40 -13.17 16 13 C 0.04 0.85 11.33 83.58 0.95 1.80 16 14 C -0.22 -4.72 10.81 22.01 0.24 -4.48 16 15 C -0.11 -2.83 10.66 22.59 0.24 -2.59 16 16 C -0.09 -2.80 6.88 40.32 0.28 -2.53 16 17 C 0.56 18.01 8.29 69.97 0.58 18.59 16 18 O -0.55 -19.73 17.67 19.43 0.34 -19.39 16 19 O -0.51 -14.71 10.54 -58.05 -0.61 -15.33 16 20 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 21 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 22 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 23 H 0.04 1.85 7.76 -2.39 -0.02 1.83 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.11 2.93 8.12 -2.39 -0.02 2.91 16 26 H 0.10 3.04 6.46 -2.39 -0.02 3.03 16 27 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 30 H 0.43 8.50 9.11 -74.06 -0.67 7.83 16 Total: -1.00 -68.39 269.55 4.87 -63.52 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.47 Total: 9.90 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.76 Total: -16.69 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -1.12 Total: -67.54 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.27 Total: -34.72 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -68.39 4.87 -63.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085846922.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.068 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds