Wall clock time and date at job start Mon Mar 30 2020 02:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76202 * 102.99946 * 2 1 4 4 C 1.38973 * 120.07637 * 180.02562 * 3 2 1 5 5 C 1.38086 * 119.91608 * 179.97438 * 4 3 2 6 6 C 1.38304 * 120.07948 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.91717 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47511 * 19.99860 * 7 6 5 9 9 N 1.46894 * 109.47259 * 140.00201 * 7 6 5 10 10 C 1.50706 * 109.47259 * 259.99854 * 7 6 5 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.38301 * 120.16214 * 0.27687 * 6 5 4 19 19 C 1.38079 * 120.07929 * 359.48794 * 18 6 5 20 20 H 1.09000 * 109.47145 * 59.99999 * 1 2 3 21 21 H 1.09003 * 109.47113 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46453 * 300.00005 * 1 2 3 23 23 H 1.08002 * 120.04368 * 359.95555 * 4 3 2 24 24 H 1.08002 * 119.95597 * 179.97438 * 5 4 3 25 25 H 1.00907 * 110.99654 * 296.04440 * 9 7 6 26 26 H 1.00901 * 111.00146 * 59.99612 * 9 7 6 27 27 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 28 28 H 1.08001 * 119.95868 * 179.72415 * 18 6 5 29 29 H 1.08003 * 120.04211 * 180.27537 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5389 2.1250 -0.0005 5 6 3.8457 3.4713 -0.0011 6 6 2.8329 4.4131 -0.0016 7 6 3.1719 5.8814 -0.0016 8 1 4.1948 6.0182 -0.3526 9 7 2.2487 6.5971 -0.8923 10 6 3.0439 6.4266 1.3976 11 1 2.7471 5.7748 2.2060 12 6 3.3056 7.7573 1.6455 13 7 3.6665 8.5511 0.6610 14 14 3.1462 8.4331 3.3797 15 1 3.4804 9.8800 3.3798 16 1 1.7527 8.2464 3.8576 17 1 4.0795 7.7100 4.2805 18 6 1.5098 4.0106 0.0042 19 6 1.1953 2.6661 -0.0002 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 4.3303 1.3901 -0.0002 24 1 4.8779 3.7892 -0.0011 25 1 2.3613 6.2946 -1.8483 26 1 1.2932 6.4857 -0.5878 27 1 3.7489 8.2002 -0.2395 28 1 0.7215 4.7489 0.0082 29 1 0.1619 2.3525 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095673346.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:02 Heat of formation + Delta-G solvation = 15.950983 kcal Electronic energy + Delta-G solvation = -12745.033744 eV Core-core repulsion = 10565.698958 eV Total energy + Delta-G solvation = -2179.334787 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.85428 -34.92701 -31.59001 -30.94854 -29.43713 -28.82359 -25.64570 -22.98390 -22.09100 -20.34565 -17.49435 -16.86823 -15.56904 -15.08119 -14.48744 -14.16328 -13.87100 -13.85208 -13.59616 -13.14836 -12.82456 -12.44833 -11.98969 -11.96933 -11.15257 -10.84747 -10.73255 -10.25758 -10.12020 -10.00882 -9.42491 -8.58748 -8.53407 -8.33067 -7.57050 -7.08857 -6.19840 -4.03735 1.63560 1.68136 1.79008 2.50411 3.47331 3.48447 3.67329 4.16785 4.60177 4.95473 4.97019 5.15786 5.25167 5.42955 5.52389 5.68701 5.85234 5.91423 6.05559 6.25604 6.35648 6.61618 6.82277 6.89249 7.34603 7.37678 7.94702 8.25926 8.62300 8.72630 9.02999 9.79902 11.19668 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.045499 B = 0.006528 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.254006 B = 4288.091262 C = 4404.057049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.143 6.143 3 C -0.108 4.108 4 C -0.098 4.098 5 C -0.106 4.106 6 C -0.064 4.064 7 C 0.236 3.764 8 H 0.039 0.961 9 N -0.829 5.829 10 C -0.609 4.609 11 H 0.046 0.954 12 C 0.038 3.962 13 N -0.890 5.890 14 Si 1.064 2.936 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.290 1.290 18 C -0.104 4.104 19 C -0.131 4.131 20 H 0.081 0.919 21 H 0.103 0.897 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.123 0.877 25 H 0.302 0.698 26 H 0.326 0.674 27 H 0.290 0.710 28 H 0.120 0.880 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -13.561 -2.228 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.097 5.903 3 C -0.220 4.220 4 C -0.121 4.121 5 C -0.126 4.126 6 C -0.068 4.068 7 C 0.127 3.873 8 H 0.057 0.943 9 N -0.357 5.357 10 C -0.647 4.647 11 H 0.064 0.936 12 C -0.172 4.172 13 N -0.524 5.524 14 Si 0.893 3.107 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.216 1.216 18 C -0.124 4.124 19 C -0.154 4.154 20 H 0.100 0.900 21 H 0.121 0.879 22 H 0.101 0.899 23 H 0.137 0.863 24 H 0.141 0.859 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.832 -12.537 -1.120 13.158 hybrid contribution -1.494 -1.360 -0.992 2.251 sum -5.326 -13.898 -2.112 15.033 Atomic orbital electron populations 1.23580 0.95122 1.06472 1.05551 1.85178 1.06182 1.05092 1.93896 1.21394 0.96742 0.95094 1.08779 1.20667 0.93837 0.96089 1.01535 1.21047 0.99658 0.91713 1.00222 1.21592 0.92549 1.00014 0.92678 1.18398 0.92809 0.81857 0.94262 0.94306 1.59460 1.09315 1.63360 1.03522 1.21663 1.54477 0.97337 0.91251 0.93565 1.25637 0.93189 0.93383 1.04953 1.70558 1.40139 1.38616 1.03054 0.83640 0.76316 0.76178 0.74562 1.20861 1.21648 1.21639 1.20858 0.96844 0.94455 1.00256 1.21031 0.97406 0.93381 1.03575 0.90013 0.87866 0.89920 0.86333 0.85879 0.88724 0.86122 0.89762 0.86182 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.15 101.05 0.92 -0.46 15 2 S -0.14 -1.95 22.56 -107.50 -2.43 -4.37 15 3 C -0.11 -1.79 6.11 -39.04 -0.24 -2.03 15 4 C -0.10 -1.69 9.79 -39.37 -0.39 -2.07 15 5 C -0.11 -2.03 9.66 -39.61 -0.38 -2.41 15 6 C -0.06 -1.34 4.89 -104.58 -0.51 -1.85 15 7 C 0.24 5.71 2.46 -70.02 -0.17 5.54 15 8 H 0.04 1.02 7.87 -51.93 -0.41 0.61 15 9 N -0.83 -18.66 7.62 -6.65 -0.05 -18.71 15 10 C -0.61 -16.79 8.70 -34.44 -0.30 -17.09 15 11 H 0.05 1.30 7.74 -52.48 -0.41 0.90 15 12 C 0.04 1.08 5.39 -17.82 -0.10 0.99 15 13 N -0.89 -26.64 13.51 55.43 0.75 -25.89 15 14 Si 1.06 25.18 29.90 -169.99 -5.08 20.10 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 18 C -0.10 -1.97 9.28 -39.62 -0.37 -2.34 15 19 C -0.13 -2.18 9.36 -39.37 -0.37 -2.55 15 20 H 0.08 0.77 7.75 -51.92 -0.40 0.37 15 21 H 0.10 0.80 8.14 -51.92 -0.42 0.38 15 22 H 0.08 0.81 7.75 -51.92 -0.40 0.41 15 23 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 24 H 0.12 2.24 8.03 -52.49 -0.42 1.82 15 25 H 0.30 6.01 9.06 -39.29 -0.36 5.65 15 26 H 0.33 7.04 7.34 -39.29 -0.29 6.75 15 27 H 0.29 8.65 6.39 -40.82 -0.26 8.39 15 28 H 0.12 2.21 6.67 -52.49 -0.35 1.86 15 29 H 0.11 1.60 5.88 -52.48 -0.31 1.29 15 LS Contribution 260.38 15.07 3.92 3.92 Total: -1.00 -30.15 260.38 -8.03 -38.18 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -3.25 Total: 11.04 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.90 Total: -24.28 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.70 Total: -44.60 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.43 Total: -4.37 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.15 -8.03 -38.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095673346.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.131 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds