Wall clock time and date at job start Mon Mar 30 2020 02:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76202 * 102.99946 * 2 1 4 4 C 1.38973 * 120.07637 * 180.02562 * 3 2 1 5 5 C 1.38086 * 119.91608 * 179.97438 * 4 3 2 6 6 C 1.38304 * 120.07948 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.91717 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47511 * 19.99860 * 7 6 5 9 9 N 1.46894 * 109.47259 * 140.00201 * 7 6 5 10 10 C 1.50706 * 109.47259 * 259.99854 * 7 6 5 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.38301 * 120.16214 * 0.27687 * 6 5 4 19 19 C 1.38079 * 120.07929 * 359.48794 * 18 6 5 20 20 H 1.09000 * 109.47145 * 59.99999 * 1 2 3 21 21 H 1.09003 * 109.47113 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46453 * 300.00005 * 1 2 3 23 23 H 1.08002 * 120.04368 * 359.95555 * 4 3 2 24 24 H 1.08002 * 119.95597 * 179.97438 * 5 4 3 25 25 H 1.00907 * 110.99654 * 296.04440 * 9 7 6 26 26 H 1.00901 * 111.00146 * 59.99612 * 9 7 6 27 27 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 28 28 H 1.08001 * 119.95868 * 179.72415 * 18 6 5 29 29 H 1.08003 * 120.04211 * 180.27537 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5389 2.1250 -0.0005 5 6 3.8457 3.4713 -0.0011 6 6 2.8329 4.4131 -0.0016 7 6 3.1719 5.8814 -0.0016 8 1 4.1948 6.0182 -0.3526 9 7 2.2487 6.5971 -0.8923 10 6 3.0439 6.4266 1.3976 11 1 2.7471 5.7748 2.2060 12 6 3.3056 7.7573 1.6455 13 7 3.6665 8.5511 0.6610 14 14 3.1462 8.4331 3.3797 15 1 3.4804 9.8800 3.3798 16 1 1.7527 8.2464 3.8576 17 1 4.0795 7.7100 4.2805 18 6 1.5098 4.0106 0.0042 19 6 1.1953 2.6661 -0.0002 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 4.3303 1.3901 -0.0002 24 1 4.8779 3.7892 -0.0011 25 1 2.3613 6.2946 -1.8483 26 1 1.2932 6.4857 -0.5878 27 1 3.7489 8.2002 -0.2395 28 1 0.7215 4.7489 0.0082 29 1 0.1619 2.3525 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095673346.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:02 Heat of formation + Delta-G solvation = -2.968035 kcal Electronic energy + Delta-G solvation = -12745.854135 eV Core-core repulsion = 10565.698958 eV Total energy + Delta-G solvation = -2180.155177 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.32176 -36.74629 -33.56696 -32.28742 -30.99261 -29.72551 -27.61815 -24.76924 -23.49182 -22.03392 -18.94172 -18.71780 -17.01658 -16.67417 -16.00280 -15.58415 -15.53380 -15.22868 -14.75026 -14.51207 -14.28144 -13.89683 -13.62707 -13.34709 -12.78125 -12.54966 -12.37065 -11.98058 -11.87566 -11.22212 -11.08595 -10.50880 -10.26054 -9.97499 -9.37438 -8.43868 -8.25627 -6.26444 0.25493 0.38305 0.58127 1.46920 1.55488 1.62664 1.82048 2.59990 2.75802 3.30175 3.83367 3.94344 4.12985 4.19528 4.24090 4.27984 4.44869 4.49339 4.79847 4.82351 4.89254 5.13524 5.22317 5.37414 5.75013 5.87148 5.96862 6.20272 6.65436 6.76071 7.02082 7.64760 8.96598 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.045499 B = 0.006528 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.254006 B = 4288.091262 C = 4404.057049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.143 6.143 3 C -0.109 4.109 4 C -0.101 4.101 5 C -0.118 4.118 6 C -0.093 4.093 7 C 0.240 3.760 8 H 0.008 0.992 9 N -0.835 5.835 10 C -0.616 4.616 11 H 0.034 0.966 12 C -0.010 4.010 13 N -0.918 5.918 14 Si 1.109 2.891 15 H -0.285 1.285 16 H -0.275 1.275 17 H -0.277 1.277 18 C -0.110 4.110 19 C -0.127 4.127 20 H 0.091 0.909 21 H 0.130 0.870 22 H 0.088 0.912 23 H 0.139 0.861 24 H 0.120 0.880 25 H 0.318 0.682 26 H 0.331 0.669 27 H 0.279 0.721 28 H 0.120 0.880 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 -15.631 -1.702 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.098 5.902 3 C -0.221 4.221 4 C -0.124 4.124 5 C -0.139 4.139 6 C -0.098 4.098 7 C 0.131 3.869 8 H 0.026 0.974 9 N -0.364 5.364 10 C -0.654 4.654 11 H 0.053 0.947 12 C -0.214 4.214 13 N -0.554 5.554 14 Si 0.933 3.067 15 H -0.211 1.211 16 H -0.200 1.200 17 H -0.202 1.202 18 C -0.130 4.130 19 C -0.151 4.151 20 H 0.110 0.890 21 H 0.149 0.851 22 H 0.107 0.893 23 H 0.157 0.843 24 H 0.138 0.862 25 H 0.129 0.871 26 H 0.145 0.855 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.353 -14.641 -0.604 15.600 hybrid contribution -1.081 -0.913 -1.210 1.862 sum -6.435 -15.554 -1.813 16.930 Atomic orbital electron populations 1.23763 0.91758 1.08577 1.06307 1.85245 1.09846 1.01854 1.93280 1.21766 0.96450 0.97400 1.06463 1.20883 0.95123 0.95457 1.00949 1.21102 0.99267 0.92696 1.00787 1.21271 0.94123 0.98202 0.96183 1.18054 0.91580 0.84442 0.92849 0.97403 1.59215 1.09271 1.63641 1.04242 1.21954 1.53481 0.97274 0.92721 0.94731 1.26969 0.92453 0.94212 1.07766 1.70673 1.42603 1.39043 1.03037 0.83041 0.77307 0.75499 0.70897 1.21059 1.20029 1.20235 1.20904 0.95831 0.95815 1.00497 1.21313 0.99097 0.92261 1.02386 0.89050 0.85123 0.89335 0.84302 0.86217 0.87073 0.85549 0.90988 0.86177 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.15 113.37 1.04 -1.07 15 2 S -0.14 -3.40 22.56 -56.49 -1.27 -4.67 15 3 C -0.11 -3.34 6.11 22.62 0.14 -3.20 15 4 C -0.10 -3.34 9.79 22.41 0.22 -3.12 15 5 C -0.12 -4.57 9.66 22.25 0.21 -4.36 15 6 C -0.09 -3.97 4.89 -19.83 -0.10 -4.06 15 7 C 0.24 12.02 2.46 43.42 0.11 12.13 15 8 H 0.01 0.45 7.87 -2.38 -0.02 0.43 15 9 N -0.83 -38.43 7.62 -174.95 -1.33 -39.77 15 10 C -0.62 -34.67 8.70 25.60 0.22 -34.45 15 11 H 0.03 1.98 7.74 -2.91 -0.02 1.96 15 12 C -0.01 -0.59 5.39 84.65 0.46 -0.13 15 13 N -0.92 -56.20 13.51 21.45 0.29 -55.91 15 14 Si 1.11 50.91 29.90 68.60 2.05 52.96 15 15 H -0.29 -13.08 7.11 99.48 0.71 -12.38 15 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 17 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 18 C -0.11 -4.10 9.28 22.25 0.21 -3.90 15 19 C -0.13 -3.94 9.36 22.41 0.21 -3.73 15 20 H 0.09 1.31 7.75 -2.39 -0.02 1.29 15 21 H 0.13 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.09 1.34 7.75 -2.39 -0.02 1.32 15 23 H 0.14 3.94 8.06 -2.91 -0.02 3.91 15 24 H 0.12 4.54 8.03 -2.91 -0.02 4.51 15 25 H 0.32 12.89 9.06 -89.69 -0.81 12.07 15 26 H 0.33 14.48 7.34 -89.69 -0.66 13.83 15 27 H 0.28 17.20 6.39 -92.71 -0.59 16.60 15 28 H 0.12 4.35 6.67 -2.91 -0.02 4.33 15 29 H 0.15 3.52 5.88 -2.91 -0.02 3.50 15 Total: -1.00 -65.28 260.38 2.32 -62.96 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.12 Total: 30.33 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 2.72 Total: -45.89 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -1.04 Total: -95.68 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.27 Total: -4.67 kcal Total: -65.28 2.32 -62.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095673346.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.989 kcal (2) G-P(sol) polarization free energy of solvation -65.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds