Wall clock time and date at job start Mon Mar 30 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48494 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46970 * 299.99996 * 3 2 1 6 6 H 1.48503 * 109.47184 * 59.99601 * 3 2 1 7 7 C 1.38918 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 162.28687 * 7 2 1 9 9 N 1.37500 * 119.99629 * 342.28229 * 7 2 1 10 10 C 1.36047 * 123.28766 * 329.17078 * 9 7 2 11 11 O 1.21216 * 126.99353 * 347.25645 * 10 9 7 12 12 C 1.49586 * 106.00869 * 167.29613 * 10 9 7 13 13 H 1.09004 * 109.95195 * 275.19719 * 12 10 9 14 14 C 1.51312 * 119.42450 * 145.96682 * 12 10 9 15 15 C 1.54192 * 106.18290 * 181.63020 * 14 12 10 16 16 C 1.52480 * 111.87509 * 57.50856 * 15 14 12 17 17 C 1.53991 * 112.11621 * 306.95470 * 16 15 14 18 18 C 1.51035 * 106.71174 * 56.34944 * 17 16 15 19 19 H 1.08996 * 109.84494 * 53.43246 * 18 17 16 20 20 C 1.36515 * 123.16108 * 149.50784 * 9 7 2 21 21 O 1.21223 * 127.25086 * 347.35862 * 20 9 7 22 22 H 0.96997 * 119.99846 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.10308 * 62.46769 * 14 12 10 24 24 H 1.08998 * 110.10397 * 300.79917 * 14 12 10 25 25 H 1.09003 * 109.00448 * 296.89328 * 15 14 12 26 26 H 1.08997 * 109.00320 * 178.12341 * 15 14 12 27 27 H 1.09002 * 108.94751 * 67.63249 * 16 15 14 28 28 H 1.08992 * 108.95161 * 186.36212 * 16 15 14 29 29 H 1.08995 * 109.99914 * 175.64318 * 17 16 15 30 30 H 1.09001 * 110.00243 * 297.04931 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7075 1.3465 -0.0006 5 1 1.8888 2.3964 -1.2126 6 1 1.8888 2.3965 1.2125 7 6 2.0083 -1.2030 0.0005 8 1 3.0499 -1.2253 -0.2840 9 7 1.3697 -2.3654 0.3635 10 6 0.3508 -2.4077 1.2640 11 8 0.0058 -1.5228 2.0172 12 6 -0.2563 -3.7689 1.1364 13 1 -0.9880 -3.7755 0.3284 14 6 -0.8175 -4.4507 2.3651 15 6 -1.3194 -5.8320 1.8985 16 6 -0.2091 -6.6498 1.2478 17 6 0.4944 -5.8763 0.1173 18 6 1.0020 -4.5889 0.7224 19 1 1.6077 -4.8071 1.6020 20 6 1.7026 -3.5893 -0.1414 21 8 2.4155 -3.8208 -1.0942 22 1 -0.4850 0.8400 -0.0004 23 1 -1.6450 -3.8691 2.7712 24 1 -0.0372 -4.5699 3.1167 25 1 -2.1256 -5.6921 1.1784 26 1 -1.7050 -6.3787 2.7590 27 1 0.5270 -6.9145 2.0070 28 1 -0.6373 -7.5638 0.8364 29 1 1.3288 -6.4602 -0.2708 30 1 -0.2138 -5.6586 -0.6823 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103032084.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:16 Heat of formation + Delta-G solvation = -71.152085 kcal Electronic energy + Delta-G solvation = -15874.197548 eV Core-core repulsion = 13248.332818 eV Total energy + Delta-G solvation = -2625.864730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92523 -37.07021 -36.97264 -34.31193 -32.59723 -30.59230 -30.12391 -25.52572 -24.20642 -22.43281 -20.94051 -19.80196 -19.02001 -17.10124 -16.17451 -15.21498 -14.92131 -14.64877 -14.32360 -13.77072 -13.72304 -13.29788 -12.75962 -12.51659 -12.34971 -12.06651 -11.59542 -11.09669 -11.02421 -10.86662 -10.78883 -10.67514 -10.47136 -10.38258 -10.02783 -9.46463 -8.89131 -8.56816 -7.90520 -6.45408 -4.17031 2.83706 3.18526 3.26201 3.31213 3.94341 4.08178 4.52483 4.56747 4.86544 4.95131 5.12874 5.41998 5.48594 5.53229 5.58628 5.66336 5.67452 5.79461 5.94172 6.21356 6.24042 6.27920 6.35771 6.36727 6.45519 6.60124 7.40137 7.84380 8.06877 8.73155 8.86615 9.16487 9.76665 10.64763 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.044500 B = 0.009980 C = 0.008562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.065684 B = 2804.818790 C = 3269.372336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.057 3.943 3 Si 0.928 3.072 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.424 5.424 10 C 0.523 3.477 11 O -0.470 6.470 12 C -0.130 4.130 13 H 0.104 0.896 14 C -0.094 4.094 15 C -0.118 4.118 16 C -0.117 4.117 17 C -0.094 4.094 18 C -0.134 4.134 19 H 0.102 0.898 20 C 0.501 3.499 21 O -0.516 6.516 22 H 0.273 0.727 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -9.839 3.616 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.154 4.154 3 Si 0.754 3.246 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.486 4.486 8 H 0.117 0.883 9 N -0.155 5.155 10 C 0.312 3.688 11 O -0.342 6.342 12 C -0.152 4.152 13 H 0.122 0.878 14 C -0.132 4.132 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.132 4.132 18 C -0.155 4.155 19 H 0.120 0.880 20 C 0.292 3.708 21 O -0.394 6.394 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.571 -9.315 3.532 10.288 hybrid contribution 0.283 0.926 -0.122 0.976 sum -2.288 -8.389 3.410 9.340 Atomic orbital electron populations 1.69825 1.06537 1.28541 1.41947 1.25339 0.95220 1.00252 0.94548 0.85872 0.79870 0.80972 0.77897 1.19013 1.20543 1.20222 1.19523 0.95810 0.83296 1.49960 0.88341 1.43577 1.31310 1.07617 1.33016 1.19906 0.81596 0.87795 0.79488 1.90523 1.63502 1.43529 1.36613 1.22066 0.97604 0.94479 1.01002 0.87771 1.21213 1.01082 0.94954 0.95916 1.21629 0.98168 0.95591 1.00163 1.21578 0.97943 0.98165 0.97724 1.21116 1.00045 0.94415 0.97616 1.21961 0.96961 0.95939 1.00656 0.87971 1.20506 0.82225 0.84650 0.83398 1.90550 1.38833 1.83262 1.26707 0.91632 0.90822 0.91398 0.92003 0.91982 0.92101 0.91955 0.90958 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.30 11.17 55.49 0.62 -23.68 16 2 C 0.06 1.60 4.84 -17.50 -0.08 1.52 16 3 Si 0.93 21.53 29.59 -169.99 -5.03 16.50 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.36 -10.32 9.60 -14.76 -0.14 -10.47 16 8 H 0.10 2.80 7.89 -52.49 -0.41 2.38 16 9 N -0.42 -11.26 2.79 -60.66 -0.17 -11.42 16 10 C 0.52 13.07 6.68 -10.94 -0.07 13.00 16 11 O -0.47 -13.18 15.75 5.61 0.09 -13.09 16 12 C -0.13 -2.44 2.41 -91.67 -0.22 -2.66 16 13 H 0.10 1.96 7.85 -51.93 -0.41 1.55 16 14 C -0.09 -1.38 5.86 -26.96 -0.16 -1.54 16 15 C -0.12 -1.37 5.81 -26.37 -0.15 -1.52 16 16 C -0.12 -1.32 5.80 -26.48 -0.15 -1.47 16 17 C -0.09 -1.34 5.84 -27.20 -0.16 -1.50 16 18 C -0.13 -2.40 2.36 -91.83 -0.22 -2.61 16 19 H 0.10 1.68 7.79 -51.93 -0.40 1.28 16 20 C 0.50 11.93 7.72 -10.75 -0.08 11.85 16 21 O -0.52 -13.50 17.83 5.61 0.10 -13.40 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 LS Contribution 251.88 15.07 3.80 3.80 Total: -1.00 -32.84 251.88 -5.76 -38.59 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.72 Total: -1.88 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.44 Total: 4.59 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.45 Total: -35.11 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.19 Total: -26.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.84 -5.76 -38.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103032084.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.558 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds