Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31351 * 1 3 3 Si 1.86804 * 119.99694 * 2 1 4 4 H 1.48500 * 109.47034 * 240.00065 * 3 2 1 5 5 H 1.48499 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47060 * 119.99926 * 3 2 1 7 7 C 1.38917 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00148 * 198.07106 * 7 2 1 9 9 N 1.37496 * 119.99980 * 18.07172 * 7 2 1 10 10 C 1.36059 * 123.28154 * 210.55395 * 9 7 2 11 11 O 1.21217 * 127.01307 * 12.63258 * 10 9 7 12 12 C 1.49543 * 105.97855 * 192.63682 * 10 9 7 13 13 H 1.08999 * 110.08195 * 84.73114 * 12 10 9 14 14 C 1.51023 * 119.73726 * 213.40695 * 12 10 9 15 15 C 1.53984 * 106.71160 * 177.78923 * 14 12 10 16 16 C 1.52475 * 112.11031 * 303.65765 * 15 14 12 17 17 C 1.54185 * 111.88596 * 53.03970 * 16 15 14 18 18 C 1.51317 * 106.19051 * 302.49321 * 17 16 15 19 19 H 1.09000 * 109.95043 * 307.62995 * 18 17 16 20 20 C 1.36045 * 123.28464 * 30.52197 * 9 7 2 21 21 O 1.21222 * 126.99881 * 12.75320 * 20 9 7 22 22 H 0.97000 * 120.00719 * 359.97438 * 1 2 3 23 23 H 1.09007 * 110.00295 * 58.49089 * 14 12 10 24 24 H 1.08997 * 110.00511 * 297.09214 * 14 12 10 25 25 H 1.08997 * 108.96077 * 182.97760 * 15 14 12 26 26 H 1.09003 * 108.95320 * 64.32620 * 15 14 12 27 27 H 1.09001 * 109.00267 * 173.66107 * 16 15 14 28 28 H 1.09003 * 108.99903 * 292.42592 * 16 15 14 29 29 H 1.09000 * 110.10863 * 61.66301 * 17 16 15 30 30 H 1.09008 * 110.10647 * 183.32662 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1012 1.6965 -1.2125 5 1 1.2824 2.7465 -0.0006 6 1 3.1011 1.6965 1.2125 7 6 2.0082 -1.2030 0.0005 8 1 3.0481 -1.2259 0.2907 9 7 1.3716 -2.3646 -0.3683 10 6 1.6980 -3.5865 0.1333 11 8 2.4050 -3.8173 1.0905 12 6 1.0068 -4.5869 -0.7373 13 1 1.6138 -4.8000 -1.6172 14 6 0.5008 -5.8778 -0.1389 15 6 -0.1999 -6.6473 -1.2738 16 6 -1.3107 -5.8282 -1.9220 17 6 -0.8108 -4.4438 -2.3813 18 6 -0.2522 -3.7667 -1.1488 19 1 -0.9896 -3.7877 -0.3464 20 6 0.3536 -2.4042 -1.2699 21 8 0.0079 -1.5163 -2.0194 22 1 -0.4851 0.8400 0.0004 23 1 -0.2087 -5.6652 0.6609 24 1 1.3358 -6.4622 0.2477 25 1 -0.6269 -7.5647 -0.8687 26 1 0.5375 -6.9071 -2.0333 27 1 -1.6945 -6.3713 -2.7856 28 1 -2.1181 -5.6929 -1.2022 29 1 -0.0294 -4.5579 -3.1327 30 1 -1.6388 -3.8616 -2.7858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103032088.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = -70.555043 kcal Electronic energy + Delta-G solvation = -15877.198616 eV Core-core repulsion = 13251.359776 eV Total energy + Delta-G solvation = -2625.838840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95486 -37.08408 -36.96834 -34.31298 -32.60334 -30.59234 -30.13225 -25.53387 -24.19364 -22.43447 -20.94827 -19.80580 -19.02201 -17.10154 -16.17921 -15.21415 -14.92443 -14.64851 -14.33102 -13.76241 -13.72713 -13.30456 -12.75609 -12.50421 -12.35063 -12.06278 -11.59216 -11.06728 -11.02254 -10.86537 -10.79328 -10.68675 -10.48099 -10.41189 -10.03510 -9.44469 -8.88971 -8.56933 -7.90878 -6.45385 -4.17182 2.84416 3.20751 3.25945 3.28337 3.94234 4.08740 4.52801 4.56674 4.86659 4.95436 5.12805 5.42097 5.48770 5.53172 5.58517 5.66491 5.68247 5.79798 5.94158 6.21398 6.24068 6.28034 6.36044 6.36748 6.45523 6.59968 7.39887 7.84876 8.06529 8.73214 8.87080 9.16504 9.76610 10.64705 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.044579 B = 0.009982 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.952201 B = 2804.358670 C = 3267.730359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.058 3.942 3 Si 0.930 3.070 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.422 5.422 10 C 0.500 3.500 11 O -0.518 6.518 12 C -0.133 4.133 13 H 0.103 0.897 14 C -0.094 4.094 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.094 4.094 18 C -0.130 4.130 19 H 0.104 0.896 20 C 0.523 3.477 21 O -0.470 6.470 22 H 0.275 0.725 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 -9.785 -3.671 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.153 4.153 3 Si 0.755 3.245 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.116 0.884 9 N -0.153 5.153 10 C 0.291 3.709 11 O -0.395 6.395 12 C -0.155 4.155 13 H 0.121 0.879 14 C -0.132 4.132 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.132 4.132 18 C -0.152 4.152 19 H 0.122 0.878 20 C 0.312 3.688 21 O -0.341 6.341 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.587 -9.254 -3.585 10.256 hybrid contribution 0.295 0.914 0.118 0.968 sum -2.293 -8.340 -3.467 9.318 Atomic orbital electron populations 1.69805 1.06547 1.28784 1.41671 1.25330 0.95207 1.00246 0.94514 0.85972 0.79159 0.80261 0.79083 1.19523 1.20695 1.19640 1.19432 0.95971 0.83342 1.49993 0.88389 1.43450 1.31386 1.07620 1.32828 1.20402 0.82250 0.84678 0.83565 1.90548 1.39043 1.83360 1.26577 1.21959 0.97006 0.95903 1.00614 0.87948 1.21111 1.00063 0.94397 0.97610 1.21576 0.97951 0.98168 0.97719 1.21629 0.98173 0.95568 1.00184 1.21226 1.01099 0.94964 0.95936 1.22077 0.97609 0.94487 1.01031 0.87764 1.19911 0.81594 0.87800 0.79483 1.90522 1.63432 1.43345 1.36821 0.91508 0.91293 0.90954 0.91953 0.92110 0.91981 0.92005 0.91416 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.29 11.17 55.49 0.62 -23.67 16 2 C 0.06 1.62 4.84 -17.51 -0.08 1.54 16 3 Si 0.93 21.55 29.59 -169.99 -5.03 16.52 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.36 -10.37 9.59 -14.76 -0.14 -10.51 16 8 H 0.10 2.77 7.89 -52.49 -0.41 2.36 16 9 N -0.42 -11.21 2.78 -60.78 -0.17 -11.38 16 10 C 0.50 11.93 7.69 -10.96 -0.08 11.85 16 11 O -0.52 -13.58 17.82 5.61 0.10 -13.48 16 12 C -0.13 -2.40 2.38 -91.83 -0.22 -2.61 16 13 H 0.10 1.69 7.79 -51.93 -0.40 1.29 16 14 C -0.09 -1.34 5.83 -27.21 -0.16 -1.50 16 15 C -0.12 -1.32 5.80 -26.49 -0.15 -1.47 16 16 C -0.12 -1.37 5.80 -26.38 -0.15 -1.53 16 17 C -0.09 -1.39 5.86 -26.96 -0.16 -1.55 16 18 C -0.13 -2.46 2.42 -91.66 -0.22 -2.68 16 19 H 0.10 1.96 7.81 -51.93 -0.41 1.55 16 20 C 0.52 13.08 6.68 -10.94 -0.07 13.00 16 21 O -0.47 -13.16 15.73 5.61 0.09 -13.07 16 22 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 30 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 LS Contribution 251.77 15.07 3.79 3.79 Total: -1.00 -32.78 251.77 -5.76 -38.54 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -3.72 Total: -1.80 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.45 Total: 4.54 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.45 Total: -35.05 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: 0.19 Total: -26.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.78 -5.76 -38.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103032088.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.010 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds