Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31351 * 1 3 3 Si 1.86804 * 119.99694 * 2 1 4 4 H 1.48500 * 109.47034 * 240.00065 * 3 2 1 5 5 H 1.48499 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47060 * 119.99926 * 3 2 1 7 7 C 1.38917 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00148 * 198.07106 * 7 2 1 9 9 N 1.37496 * 119.99980 * 18.07172 * 7 2 1 10 10 C 1.36059 * 123.28154 * 210.55395 * 9 7 2 11 11 O 1.21217 * 127.01307 * 12.63258 * 10 9 7 12 12 C 1.49543 * 105.97855 * 192.63682 * 10 9 7 13 13 H 1.08999 * 110.08195 * 84.73114 * 12 10 9 14 14 C 1.51023 * 119.73726 * 213.40695 * 12 10 9 15 15 C 1.53984 * 106.71160 * 177.78923 * 14 12 10 16 16 C 1.52475 * 112.11031 * 303.65765 * 15 14 12 17 17 C 1.54185 * 111.88596 * 53.03970 * 16 15 14 18 18 C 1.51317 * 106.19051 * 302.49321 * 17 16 15 19 19 H 1.09000 * 109.95043 * 307.62995 * 18 17 16 20 20 C 1.36045 * 123.28464 * 30.52197 * 9 7 2 21 21 O 1.21222 * 126.99881 * 12.75320 * 20 9 7 22 22 H 0.97000 * 120.00719 * 359.97438 * 1 2 3 23 23 H 1.09007 * 110.00295 * 58.49089 * 14 12 10 24 24 H 1.08997 * 110.00511 * 297.09214 * 14 12 10 25 25 H 1.08997 * 108.96077 * 182.97760 * 15 14 12 26 26 H 1.09003 * 108.95320 * 64.32620 * 15 14 12 27 27 H 1.09001 * 109.00267 * 173.66107 * 16 15 14 28 28 H 1.09003 * 108.99903 * 292.42592 * 16 15 14 29 29 H 1.09000 * 110.10863 * 61.66301 * 17 16 15 30 30 H 1.09008 * 110.10647 * 183.32662 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1012 1.6965 -1.2125 5 1 1.2824 2.7465 -0.0006 6 1 3.1011 1.6965 1.2125 7 6 2.0082 -1.2030 0.0005 8 1 3.0481 -1.2259 0.2907 9 7 1.3716 -2.3646 -0.3683 10 6 1.6980 -3.5865 0.1333 11 8 2.4050 -3.8173 1.0905 12 6 1.0068 -4.5869 -0.7373 13 1 1.6138 -4.8000 -1.6172 14 6 0.5008 -5.8778 -0.1389 15 6 -0.1999 -6.6473 -1.2738 16 6 -1.3107 -5.8282 -1.9220 17 6 -0.8108 -4.4438 -2.3813 18 6 -0.2522 -3.7667 -1.1488 19 1 -0.9896 -3.7877 -0.3464 20 6 0.3536 -2.4042 -1.2699 21 8 0.0079 -1.5163 -2.0194 22 1 -0.4851 0.8400 0.0004 23 1 -0.2087 -5.6652 0.6609 24 1 1.3358 -6.4622 0.2477 25 1 -0.6269 -7.5647 -0.8687 26 1 0.5375 -6.9071 -2.0333 27 1 -1.6945 -6.3713 -2.7856 28 1 -2.1181 -5.6929 -1.2022 29 1 -0.0294 -4.5579 -3.1327 30 1 -1.6388 -3.8616 -2.7858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103032088.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = -92.540481 kcal Electronic energy + Delta-G solvation = -15878.151976 eV Core-core repulsion = 13251.359776 eV Total energy + Delta-G solvation = -2626.792201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.70111 -38.97875 -38.50228 -36.34783 -34.53182 -31.80853 -31.69289 -27.42131 -25.83955 -23.91368 -22.45748 -21.05528 -20.77674 -19.10391 -18.04385 -17.08220 -16.63629 -16.32170 -15.88866 -15.49155 -15.30724 -14.69752 -14.36748 -14.04350 -13.81485 -13.67285 -13.12226 -13.00146 -12.89174 -12.27467 -12.25686 -12.11615 -11.88400 -11.56954 -11.40650 -11.29868 -10.63086 -10.48849 -9.96585 -8.57638 -6.37760 0.92998 1.31637 1.38012 1.46198 2.04362 2.21174 2.67158 3.00294 3.11363 3.62057 3.67784 4.08367 4.24304 4.27868 4.32683 4.41585 4.52911 4.53947 4.92167 4.94652 5.15797 5.20670 5.23062 5.27548 5.35264 5.39902 5.57576 5.76969 6.04986 6.63978 6.93501 7.08491 7.73979 8.52606 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.044579 B = 0.009982 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.952201 B = 2804.358670 C = 3267.730359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.011 3.989 3 Si 0.996 3.004 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.398 4.398 8 H 0.087 0.913 9 N -0.448 5.448 10 C 0.491 3.509 11 O -0.549 6.549 12 C -0.116 4.116 13 H 0.124 0.876 14 C -0.093 4.093 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.091 4.091 18 C -0.118 4.118 19 H 0.105 0.895 20 C 0.511 3.489 21 O -0.511 6.511 22 H 0.276 0.724 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -11.631 -4.480 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.197 4.197 3 Si 0.818 3.182 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.105 0.895 9 N -0.180 5.180 10 C 0.285 3.715 11 O -0.429 6.429 12 C -0.137 4.137 13 H 0.142 0.858 14 C -0.131 4.131 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.129 4.129 18 C -0.140 4.140 19 H 0.123 0.877 20 C 0.303 3.697 21 O -0.385 6.385 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.078 -11.136 -4.388 12.359 hybrid contribution 0.482 1.463 0.406 1.593 sum -2.596 -9.673 -3.982 10.778 Atomic orbital electron populations 1.69888 1.07951 1.29603 1.42723 1.26329 0.96102 1.03634 0.93591 0.84978 0.78045 0.75732 0.79487 1.19124 1.19636 1.18360 1.19656 0.96119 0.85197 1.51369 0.89471 1.43887 1.32277 1.08101 1.33698 1.21426 0.81319 0.85349 0.83424 1.90509 1.40321 1.83923 1.28133 1.22018 0.95756 0.96102 0.99850 0.85815 1.21225 1.00527 0.92504 0.98813 1.21565 0.97960 0.98397 0.96749 1.21623 0.98304 0.93469 1.01506 1.21323 1.01094 0.96488 0.94039 1.22077 0.97839 0.90646 1.03427 0.87708 1.20952 0.80901 0.89735 0.78140 1.90470 1.64286 1.45430 1.38331 0.91434 0.91713 0.90172 0.89135 0.90642 0.89000 0.91668 0.90583 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.94 11.17 21.65 0.24 -51.70 16 2 C 0.01 0.61 4.84 84.93 0.41 1.02 16 3 Si 1.00 45.00 29.59 68.60 2.03 47.03 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.40 -23.64 9.59 83.97 0.81 -22.83 16 8 H 0.09 5.16 7.89 -2.91 -0.02 5.14 16 9 N -0.45 -24.49 2.78 -581.58 -1.62 -26.11 16 10 C 0.49 23.75 7.69 87.09 0.67 24.41 16 11 O -0.55 -29.38 17.82 -2.83 -0.05 -29.43 16 12 C -0.12 -3.99 2.38 -11.58 -0.03 -4.02 16 13 H 0.12 3.77 7.79 -2.39 -0.02 3.75 16 14 C -0.09 -2.36 5.83 30.28 0.18 -2.18 16 15 C -0.11 -1.92 5.80 30.75 0.18 -1.74 16 16 C -0.11 -2.08 5.80 30.82 0.18 -1.90 16 17 C -0.09 -2.45 5.86 30.45 0.18 -2.27 16 18 C -0.12 -4.34 2.42 -11.47 -0.03 -4.37 16 19 H 0.11 3.85 7.81 -2.39 -0.02 3.83 16 20 C 0.51 26.05 6.68 87.11 0.58 26.64 16 21 O -0.51 -29.46 15.73 -2.85 -0.04 -29.50 16 22 H 0.28 15.57 8.31 -92.71 -0.77 14.79 16 23 H 0.06 1.71 7.94 -2.38 -0.02 1.69 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.92 7.89 -2.39 -0.02 1.90 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -74.48 251.77 4.82 -69.66 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 1.14 Total: 7.29 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 3.12 Total: 12.76 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.38 Total: -77.81 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -0.10 Total: -58.94 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -74.48 4.82 -69.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103032088.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.876 kcal (2) G-P(sol) polarization free energy of solvation -74.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds