Wall clock time and date at job start Mon Mar 30 2020 02:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76197 * 103.00247 * 2 1 4 4 C 1.38995 * 120.07603 * 0.02898 * 3 2 1 5 5 C 1.38071 * 119.91756 * 179.97438 * 4 3 2 6 6 C 1.38320 * 120.07539 * 359.97438 * 5 4 3 7 7 C 1.38283 * 120.16703 * 359.74772 * 6 5 4 8 8 C 1.38105 * 120.07405 * 0.50642 * 7 6 5 9 9 C 1.50696 * 120.03656 * 179.77190 * 8 7 6 10 10 H 1.09001 * 109.47545 * 144.72525 * 9 8 7 11 11 N 1.46900 * 109.47209 * 24.72223 * 9 8 7 12 12 C 1.50706 * 109.47259 * 264.72185 * 9 8 7 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 H 1.09003 * 109.47387 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46753 * 299.99806 * 1 2 3 22 22 H 1.08991 * 109.47402 * 59.99510 * 1 2 3 23 23 H 1.08002 * 120.04421 * 359.94820 * 4 3 2 24 24 H 1.07999 * 119.95771 * 179.97438 * 5 4 3 25 25 H 1.08003 * 119.91452 * 179.97438 * 6 5 4 26 26 H 1.08000 * 119.96082 * 180.25506 * 7 6 5 27 27 H 1.00900 * 111.00100 * 299.99420 * 11 9 8 28 28 H 1.00898 * 111.00378 * 63.95632 * 11 9 8 29 29 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6661 0.0006 5 6 1.5095 4.0106 0.0011 6 6 2.8329 4.4130 0.0016 7 6 3.8456 3.4714 0.0068 8 6 3.5386 2.1249 0.0010 9 6 4.6429 1.0994 0.0015 10 1 4.3361 0.2353 0.5908 11 7 5.8556 1.6861 0.5872 12 6 4.9273 0.6667 -1.4139 13 1 4.3649 1.0922 -2.2319 14 6 5.9054 -0.2721 -1.6643 15 7 6.5899 -0.7905 -0.6682 16 14 6.2573 -0.8089 -3.4186 17 1 5.4012 -1.9729 -3.7614 18 1 5.9640 0.3119 -4.3475 19 1 7.6867 -1.1926 -3.5415 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.1617 2.3526 0.0002 24 1 0.7212 4.7488 0.0012 25 1 3.0759 5.4654 0.0016 26 1 4.8777 3.7893 0.0113 27 1 6.1605 2.4894 0.0583 28 1 5.7098 1.9253 1.5565 29 1 6.4068 -0.5120 0.2428 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104519048.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:04 Heat of formation + Delta-G solvation = 21.397773 kcal Electronic energy + Delta-G solvation = -13082.985443 eV Core-core repulsion = 10903.886847 eV Total energy + Delta-G solvation = -2179.098596 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.80686 -34.91642 -31.55676 -30.81928 -29.40105 -28.47745 -25.58028 -22.80030 -22.22447 -20.19778 -17.25398 -16.73215 -15.54717 -15.06597 -14.34840 -14.10406 -13.68465 -13.62856 -13.52883 -13.24347 -12.53215 -12.20342 -11.93688 -11.76663 -11.08728 -10.69636 -10.54811 -10.38234 -10.01594 -9.46055 -9.27950 -8.88722 -8.28656 -8.02862 -7.50357 -6.79481 -6.10857 -3.92506 1.69342 1.88668 2.05315 2.98079 3.52560 3.55775 3.71377 4.19168 4.67499 5.21676 5.24928 5.27218 5.30878 5.47926 5.52851 5.77230 5.84281 6.00329 6.09264 6.24637 6.48118 6.74250 6.80014 6.91200 7.30013 7.39890 8.02454 8.33017 8.70320 8.77937 9.11796 9.89293 11.28996 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.010967 C = 0.009075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.056995 B = 2552.517133 C = 3084.686990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 S -0.067 6.067 3 C -0.089 4.089 4 C -0.138 4.138 5 C -0.129 4.129 6 C -0.126 4.126 7 C -0.117 4.117 8 C -0.048 4.048 9 C 0.236 3.764 10 H 0.049 0.951 11 N -0.829 5.829 12 C -0.596 4.596 13 H 0.045 0.955 14 C 0.040 3.960 15 N -0.892 5.892 16 Si 1.065 2.935 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.286 1.286 20 H 0.101 0.899 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.326 0.674 28 H 0.302 0.698 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 6.202 2.146 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.336 4.336 2 S 0.176 5.824 3 C -0.202 4.202 4 C -0.162 4.162 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.137 4.137 8 C -0.056 4.056 9 C 0.127 3.873 10 H 0.066 0.934 11 N -0.357 5.357 12 C -0.635 4.635 13 H 0.064 0.936 14 C -0.170 4.170 15 N -0.526 5.526 16 Si 0.894 3.106 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.212 1.212 20 H 0.120 0.880 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.132 0.868 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.484 3.392 1.091 9.202 hybrid contribution -2.550 3.207 0.948 4.205 sum -11.034 6.599 2.039 13.017 Atomic orbital electron populations 1.23756 0.99048 1.06213 1.04594 1.86240 1.01297 1.02956 1.91865 1.21662 0.96257 0.96590 1.05703 1.21046 0.97590 0.93354 1.04216 1.20787 0.96252 0.94978 1.02907 1.21027 0.92965 0.98884 1.01845 1.20932 0.99106 0.92418 1.01235 1.21284 0.94594 0.96264 0.93436 1.18414 0.82079 0.89560 0.97276 0.93393 1.59442 1.36409 1.36124 1.03756 1.21540 1.23986 1.28082 0.89858 0.93642 1.25559 0.92872 0.93407 1.05123 1.70518 1.38752 1.41332 1.02046 0.83631 0.76304 0.75863 0.74773 1.21561 1.21798 1.21207 0.88049 0.90760 0.90458 0.86771 0.86803 0.86782 0.86212 0.86020 0.88719 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.15 101.05 0.92 -1.32 15 2 S -0.07 -1.30 20.86 -107.50 -2.24 -3.54 15 3 C -0.09 -1.79 6.11 -39.04 -0.24 -2.03 15 4 C -0.14 -2.35 9.36 -39.36 -0.37 -2.72 15 5 C -0.13 -2.03 10.04 -39.61 -0.40 -2.43 15 6 C -0.13 -2.07 10.04 -39.53 -0.40 -2.47 15 7 C -0.12 -2.23 9.26 -39.61 -0.37 -2.59 15 8 C -0.05 -1.05 5.00 -104.41 -0.52 -1.57 15 9 C 0.24 5.87 1.93 -70.02 -0.14 5.73 15 10 H 0.05 1.31 6.88 -51.93 -0.36 0.95 15 11 N -0.83 -19.11 7.39 -6.65 -0.05 -19.16 15 12 C -0.60 -16.66 8.70 -34.44 -0.30 -16.96 15 13 H 0.05 1.32 7.74 -52.48 -0.41 0.91 15 14 C 0.04 1.15 5.39 -17.82 -0.10 1.05 15 15 N -0.89 -27.11 13.51 55.43 0.75 -26.37 15 16 Si 1.06 25.82 29.90 -169.99 -5.08 20.73 15 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 20 H 0.10 1.16 8.14 -51.92 -0.42 0.74 15 21 H 0.07 0.89 7.75 -51.92 -0.40 0.49 15 22 H 0.08 0.97 7.75 -51.93 -0.40 0.57 15 23 H 0.11 1.64 5.88 -52.49 -0.31 1.34 15 24 H 0.11 1.42 8.06 -52.49 -0.42 1.00 15 25 H 0.11 1.52 8.06 -52.48 -0.42 1.10 15 26 H 0.12 2.16 6.29 -52.49 -0.33 1.83 15 27 H 0.33 7.19 7.21 -39.29 -0.28 6.90 15 28 H 0.30 6.17 9.06 -39.29 -0.36 5.81 15 29 H 0.29 8.81 6.40 -40.82 -0.26 8.55 15 LS Contribution 257.17 15.07 3.88 3.88 Total: -1.00 -31.07 257.17 -7.82 -38.89 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.17 Total: 10.87 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -1.90 Total: -25.30 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.70 Total: -45.53 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.73 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.24 Total: -3.54 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.07 -7.82 -38.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104519048.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.285 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds