Wall clock time and date at job start Mon Mar 30 2020 02:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76197 * 103.00247 * 2 1 4 4 C 1.38995 * 120.07603 * 0.02898 * 3 2 1 5 5 C 1.38071 * 119.91756 * 179.97438 * 4 3 2 6 6 C 1.38320 * 120.07539 * 359.97438 * 5 4 3 7 7 C 1.38283 * 120.16703 * 359.74772 * 6 5 4 8 8 C 1.38105 * 120.07405 * 0.50642 * 7 6 5 9 9 C 1.50696 * 120.03656 * 179.77190 * 8 7 6 10 10 H 1.09001 * 109.47545 * 144.72525 * 9 8 7 11 11 N 1.46900 * 109.47209 * 24.72223 * 9 8 7 12 12 C 1.50706 * 109.47259 * 264.72185 * 9 8 7 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 H 1.09003 * 109.47387 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46753 * 299.99806 * 1 2 3 22 22 H 1.08991 * 109.47402 * 59.99510 * 1 2 3 23 23 H 1.08002 * 120.04421 * 359.94820 * 4 3 2 24 24 H 1.07999 * 119.95771 * 179.97438 * 5 4 3 25 25 H 1.08003 * 119.91452 * 179.97438 * 6 5 4 26 26 H 1.08000 * 119.96082 * 180.25506 * 7 6 5 27 27 H 1.00900 * 111.00100 * 299.99420 * 11 9 8 28 28 H 1.00898 * 111.00378 * 63.95632 * 11 9 8 29 29 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6661 0.0006 5 6 1.5095 4.0106 0.0011 6 6 2.8329 4.4130 0.0016 7 6 3.8456 3.4714 0.0068 8 6 3.5386 2.1249 0.0010 9 6 4.6429 1.0994 0.0015 10 1 4.3361 0.2353 0.5908 11 7 5.8556 1.6861 0.5872 12 6 4.9273 0.6667 -1.4139 13 1 4.3649 1.0922 -2.2319 14 6 5.9054 -0.2721 -1.6643 15 7 6.5899 -0.7905 -0.6682 16 14 6.2573 -0.8089 -3.4186 17 1 5.4012 -1.9729 -3.7614 18 1 5.9640 0.3119 -4.3475 19 1 7.6867 -1.1926 -3.5415 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.1617 2.3526 0.0002 24 1 0.7212 4.7488 0.0012 25 1 3.0759 5.4654 0.0016 26 1 4.8777 3.7893 0.0113 27 1 6.1605 2.4894 0.0583 28 1 5.7098 1.9253 1.5565 29 1 6.4068 -0.5120 0.2428 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104519048.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:04 Heat of formation + Delta-G solvation = 0.973652 kcal Electronic energy + Delta-G solvation = -13083.871099 eV Core-core repulsion = 10903.886847 eV Total energy + Delta-G solvation = -2179.984252 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25408 -36.73413 -33.55265 -32.17608 -30.96211 -29.63050 -27.56827 -24.61734 -23.59703 -21.85514 -18.94430 -18.51005 -16.99568 -16.74550 -16.01014 -15.66915 -15.46093 -14.96360 -14.86895 -14.63840 -14.03163 -13.82266 -13.41973 -13.30102 -12.73378 -12.55705 -12.19792 -11.97257 -11.90269 -10.92262 -10.83937 -10.61148 -10.42283 -9.66136 -9.32351 -8.38367 -8.24071 -6.17597 0.32179 0.48359 0.72237 1.54470 1.63223 1.69398 1.80220 2.63093 2.82751 3.35442 3.94272 4.04757 4.16751 4.20281 4.25720 4.28535 4.50744 4.59287 4.79470 4.87251 5.01934 5.15131 5.36537 5.51820 5.65725 5.95484 6.05804 6.26295 6.68606 6.80271 7.03679 7.70737 9.02019 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.010967 C = 0.009075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.056995 B = 2552.517133 C = 3084.686990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.158 6.158 3 C -0.100 4.100 4 C -0.138 4.138 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.129 4.129 8 C -0.088 4.088 9 C 0.244 3.756 10 H 0.015 0.985 11 N -0.836 5.836 12 C -0.594 4.594 13 H 0.027 0.973 14 C -0.009 4.009 15 N -0.921 5.921 16 Si 1.107 2.893 17 H -0.278 1.278 18 H -0.279 1.279 19 H -0.284 1.284 20 H 0.121 0.879 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.144 0.856 24 H 0.158 0.842 25 H 0.151 0.849 26 H 0.121 0.879 27 H 0.331 0.669 28 H 0.317 0.683 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.653 8.123 1.619 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.085 5.915 3 C -0.213 4.213 4 C -0.162 4.162 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.149 4.149 8 C -0.095 4.095 9 C 0.135 3.865 10 H 0.032 0.968 11 N -0.366 5.366 12 C -0.633 4.633 13 H 0.045 0.955 14 C -0.212 4.212 15 N -0.557 5.557 16 Si 0.931 3.069 17 H -0.204 1.204 18 H -0.204 1.204 19 H -0.210 1.210 20 H 0.139 0.861 21 H 0.112 0.888 22 H 0.108 0.892 23 H 0.161 0.839 24 H 0.176 0.824 25 H 0.168 0.832 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.128 0.872 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.717 5.332 0.572 11.984 hybrid contribution -2.011 2.706 1.166 3.568 sum -12.728 8.038 1.738 15.154 Atomic orbital electron populations 1.23773 0.93027 1.08049 1.06097 1.86441 1.08030 1.04774 1.92272 1.21755 0.96469 0.96660 1.06461 1.21450 0.98236 0.93501 1.03041 1.21339 0.97119 0.95212 1.00005 1.21440 0.92646 1.00095 1.00075 1.21074 1.00254 0.91920 1.01617 1.21039 0.94565 0.96633 0.97284 1.17981 0.83693 0.89865 0.95008 0.96781 1.59204 1.36229 1.36428 1.04690 1.21722 1.22936 1.27440 0.91164 0.95458 1.26842 0.92893 0.93615 1.07898 1.70633 1.40359 1.42824 1.01881 0.83068 0.76348 0.76276 0.71169 1.20405 1.20394 1.20977 0.86094 0.88799 0.89159 0.83857 0.82403 0.83154 0.86129 0.85506 0.87182 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.15 113.37 1.04 -2.39 15 2 S -0.16 -6.20 20.86 -56.49 -1.18 -7.38 15 3 C -0.10 -3.99 6.11 22.62 0.14 -3.86 15 4 C -0.14 -4.28 9.36 22.41 0.21 -4.07 15 5 C -0.12 -3.15 10.04 22.25 0.22 -2.92 15 6 C -0.12 -3.56 10.04 22.30 0.22 -3.34 15 7 C -0.13 -4.78 9.26 22.25 0.21 -4.58 15 8 C -0.09 -3.87 5.00 -19.73 -0.10 -3.96 15 9 C 0.24 12.63 1.93 43.42 0.08 12.71 15 10 H 0.01 0.84 6.88 -2.39 -0.02 0.82 15 11 N -0.84 -39.89 7.39 -174.95 -1.29 -41.18 15 12 C -0.59 -34.28 8.70 25.60 0.22 -34.06 15 13 H 0.03 1.63 7.74 -2.91 -0.02 1.61 15 14 C -0.01 -0.54 5.39 84.65 0.46 -0.09 15 15 N -0.92 -57.81 13.51 21.45 0.29 -57.52 15 16 Si 1.11 52.80 29.90 68.60 2.05 54.85 15 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 20 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 21 H 0.09 1.93 7.75 -2.39 -0.02 1.91 15 22 H 0.09 1.97 7.75 -2.39 -0.02 1.95 15 23 H 0.14 3.50 5.88 -2.91 -0.02 3.48 15 24 H 0.16 2.89 8.06 -2.91 -0.02 2.87 15 25 H 0.15 3.27 8.06 -2.91 -0.02 3.24 15 26 H 0.12 4.30 6.29 -2.91 -0.02 4.28 15 27 H 0.33 14.97 7.21 -89.69 -0.65 14.33 15 28 H 0.32 13.39 9.06 -89.70 -0.81 12.57 15 29 H 0.28 17.62 6.40 -92.71 -0.59 17.03 15 Total: -1.00 -70.14 257.17 2.46 -67.67 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.11 Total: 30.11 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 2.70 Total: -46.55 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -1.00 Total: -98.70 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.05 Total: 54.85 kcal Atomic # 16 Polarization: -6.20 SS G_CDS: -1.18 Total: -7.38 kcal Total: -70.14 2.46 -67.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104519048.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.645 kcal (2) G-P(sol) polarization free energy of solvation -70.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds