Wall clock time and date at job start Mon Mar 30 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76204 * 102.99945 * 2 1 4 4 C 1.38992 * 120.07852 * 0.02562 * 3 2 1 5 5 C 1.38066 * 119.91758 * 179.97438 * 4 3 2 6 6 C 1.38325 * 120.07958 * 359.72260 * 5 4 3 7 7 C 1.38281 * 120.15751 * 0.55156 * 6 5 4 8 8 C 1.50700 * 119.95549 * 179.72770 * 7 6 5 9 9 H 1.09004 * 109.47210 * 159.72513 * 8 7 6 10 10 N 1.46899 * 109.47483 * 39.72182 * 8 7 6 11 11 C 1.50702 * 109.46869 * 279.72220 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 8 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 8 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.38094 * 120.08467 * 359.44756 * 7 6 5 20 20 H 1.09001 * 109.46769 * 299.99941 * 1 2 3 21 21 H 1.09000 * 109.47317 * 59.99902 * 1 2 3 22 22 H 1.09001 * 109.46867 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.04302 * 359.97438 * 4 3 2 24 24 H 1.07999 * 119.95370 * 180.02562 * 5 4 3 25 25 H 1.07999 * 119.91713 * 180.29427 * 6 5 4 26 26 H 1.00903 * 111.00048 * 300.00270 * 10 8 7 27 27 H 1.00904 * 110.99882 * 63.95460 * 10 8 7 28 28 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 29 29 H 1.07998 * 120.04467 * 180.29918 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0106 0.0011 6 6 2.8328 4.4131 0.0069 7 6 3.8454 3.4715 0.0006 8 6 5.2856 3.9152 0.0008 9 1 5.9172 3.0991 0.3519 10 7 5.4413 5.0729 0.8915 11 6 5.6930 4.2994 -1.3983 12 1 4.9802 4.2298 -2.2067 13 6 6.9739 4.7459 -1.6454 14 7 7.3278 5.0864 -2.8654 15 14 8.2067 4.8670 -0.2471 16 1 8.9439 3.5838 -0.1247 17 1 9.1668 5.9647 -0.5274 18 1 7.4894 5.1489 1.0222 19 6 3.5386 2.1250 0.0001 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.1617 2.3526 0.0005 24 1 0.7211 4.7487 0.0019 25 1 3.0757 5.4655 0.0121 26 1 4.8654 5.8435 0.5870 27 1 5.2361 4.8238 1.8475 28 1 8.2290 5.4002 -3.0392 29 1 4.3300 1.3901 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104524524.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:06 Heat of formation + Delta-G solvation = 7.315387 kcal Electronic energy + Delta-G solvation = -12775.385666 eV Core-core repulsion = 10595.676412 eV Total energy + Delta-G solvation = -2179.709254 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.26400 -36.57675 -33.99880 -31.93985 -31.41801 -29.59298 -28.23567 -24.59949 -23.59669 -21.70603 -18.94032 -18.32296 -17.25960 -16.62611 -16.39771 -15.69625 -15.52345 -15.07461 -14.69810 -14.44108 -14.29744 -13.80878 -13.58107 -13.38033 -12.85237 -12.71643 -12.36838 -12.07627 -11.68420 -11.42816 -11.13887 -10.74323 -10.59436 -9.66266 -8.92509 -8.35469 -8.24006 -6.37760 0.30156 0.47721 0.60017 1.52033 1.52669 1.58508 1.95028 2.61431 2.79305 3.14665 3.93170 4.00413 4.19460 4.23969 4.27938 4.30685 4.48875 4.59406 4.73335 4.85449 5.04584 5.11434 5.29650 5.48097 5.51917 5.79841 6.00861 6.14836 6.49037 6.77366 7.03594 7.40232 8.89267 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.043375 B = 0.007240 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.377204 B = 3866.522815 C = 4047.888772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.163 6.163 3 C -0.089 4.089 4 C -0.148 4.148 5 C -0.098 4.098 6 C -0.133 4.133 7 C -0.074 4.074 8 C 0.227 3.773 9 H 0.039 0.961 10 N -0.833 5.833 11 C -0.516 4.516 12 H 0.022 0.978 13 C 0.025 3.975 14 N -0.952 5.952 15 Si 0.930 3.070 16 H -0.303 1.303 17 H -0.314 1.314 18 H -0.154 1.154 19 C -0.122 4.122 20 H 0.096 0.904 21 H 0.090 0.910 22 H 0.128 0.872 23 H 0.150 0.850 24 H 0.153 0.847 25 H 0.125 0.875 26 H 0.337 0.663 27 H 0.331 0.669 28 H 0.263 0.737 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 -6.168 10.261 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.078 5.922 3 C -0.201 4.201 4 C -0.172 4.172 5 C -0.118 4.118 6 C -0.153 4.153 7 C -0.078 4.078 8 C 0.117 3.883 9 H 0.057 0.943 10 N -0.364 5.364 11 C -0.554 4.554 12 H 0.040 0.960 13 C -0.173 4.173 14 N -0.591 5.591 15 Si 0.756 3.244 16 H -0.231 1.231 17 H -0.242 1.242 18 H -0.074 1.074 19 C -0.146 4.146 20 H 0.115 0.885 21 H 0.109 0.891 22 H 0.146 0.854 23 H 0.168 0.832 24 H 0.171 0.829 25 H 0.143 0.857 26 H 0.152 0.848 27 H 0.144 0.856 28 H 0.071 0.929 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.690 -7.163 9.957 18.381 hybrid contribution -0.672 1.050 -0.275 1.276 sum -14.362 -6.113 9.682 18.367 Atomic orbital electron populations 1.23753 0.91009 1.08558 1.06555 1.85531 1.10550 1.03071 1.93033 1.21792 0.96300 0.97237 1.04810 1.21375 0.98708 0.92897 1.04190 1.21333 0.96235 0.96050 0.98134 1.21154 0.92925 0.99620 1.01637 1.20987 0.98230 0.93196 0.95345 1.18236 0.87902 0.90371 0.91828 0.94324 1.59725 1.62195 1.09362 1.05101 1.20924 0.97042 1.45162 0.92282 0.96008 1.25931 1.00671 0.92637 0.98076 1.70106 1.20071 1.45833 1.23101 0.86301 0.76341 0.75547 0.86255 1.23094 1.24203 1.07383 1.20703 0.94856 0.95748 1.03258 0.88517 0.89072 0.85397 0.83212 0.82887 0.85727 0.84831 0.85581 0.92897 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.15 113.37 1.04 -0.97 15 2 S -0.16 -4.32 22.56 -56.49 -1.27 -5.59 15 3 C -0.09 -2.87 6.11 22.62 0.14 -2.73 15 4 C -0.15 -4.05 9.36 22.41 0.21 -3.84 15 5 C -0.10 -2.76 10.04 22.25 0.22 -2.54 15 6 C -0.13 -4.61 9.29 22.30 0.21 -4.41 15 7 C -0.07 -2.97 4.88 -19.89 -0.10 -3.06 15 8 C 0.23 10.30 2.35 43.42 0.10 10.40 15 9 H 0.04 1.81 7.43 -2.38 -0.02 1.79 15 10 N -0.83 -32.17 5.64 -174.95 -0.99 -33.16 15 11 C -0.52 -29.65 9.29 25.60 0.24 -29.42 15 12 H 0.02 1.42 7.98 -2.91 -0.02 1.39 15 13 C 0.03 1.50 5.47 84.66 0.46 1.96 15 14 N -0.95 -61.29 13.96 21.45 0.30 -60.99 15 15 Si 0.93 45.14 26.94 68.60 1.85 46.99 15 16 H -0.30 -14.91 7.11 99.48 0.71 -14.21 15 17 H -0.31 -15.65 7.11 99.48 0.71 -14.94 15 18 H -0.15 -6.49 5.16 99.48 0.51 -5.97 15 19 C -0.12 -4.69 9.41 22.41 0.21 -4.48 15 20 H 0.10 1.25 7.75 -2.39 -0.02 1.23 15 21 H 0.09 1.30 7.75 -2.39 -0.02 1.28 15 22 H 0.13 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.15 2.97 5.88 -2.91 -0.02 2.95 15 24 H 0.15 3.18 8.06 -2.91 -0.02 3.16 15 25 H 0.12 4.14 6.64 -2.91 -0.02 4.12 15 26 H 0.34 12.49 7.33 -89.69 -0.66 11.83 15 27 H 0.33 10.67 9.06 -89.69 -0.81 9.86 15 28 H 0.26 16.00 8.31 -92.71 -0.77 15.23 15 29 H 0.11 4.38 8.03 -2.91 -0.02 4.36 15 Total: -1.00 -70.50 256.21 2.12 -68.37 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.49 Total: 23.47 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 2.73 Total: -39.08 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -0.69 Total: -94.15 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.85 Total: 46.99 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.27 Total: -5.59 kcal Total: -70.50 2.12 -68.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104524524.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.686 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds