Wall clock time and date at job start Mon Mar 30 2020 02:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76205 * 102.99830 * 2 1 4 4 C 1.38992 * 120.07980 * 0.29725 * 3 2 1 5 5 C 1.38067 * 119.91887 * 180.25405 * 4 3 2 6 6 C 1.38322 * 120.07362 * 359.74612 * 5 4 3 7 7 C 1.38274 * 120.16612 * 359.97438 * 6 5 4 8 8 C 1.38102 * 120.08010 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.03884 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.46649 * 219.99245 * 9 8 7 11 11 N 1.46895 * 109.47234 * 339.99667 * 9 8 7 12 12 C 1.50695 * 109.47014 * 99.99702 * 9 8 7 13 13 H 1.08004 * 120.00546 * 0.27454 * 12 9 8 14 14 C 1.37885 * 119.99721 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47093 * 60.00328 * 16 14 12 18 18 H 1.48495 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47239 * 300.00048 * 16 14 12 20 20 H 1.08998 * 109.47541 * 59.99931 * 1 2 3 21 21 H 1.09007 * 109.46989 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47215 * 299.99636 * 1 2 3 23 23 H 1.08002 * 120.04055 * 359.97438 * 4 3 2 24 24 H 1.07996 * 119.95845 * 179.76246 * 5 4 3 25 25 H 1.08002 * 119.91300 * 179.97438 * 6 5 4 26 26 H 1.08007 * 119.95907 * 180.02562 * 7 6 5 27 27 H 1.00895 * 111.00026 * 59.99561 * 11 9 8 28 28 H 1.00893 * 111.00079 * 183.96053 * 11 9 8 29 29 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1951 2.6662 0.0062 5 6 1.5094 4.0106 0.0009 6 6 2.8328 4.4131 -0.0053 7 6 3.8454 3.4715 -0.0057 8 6 3.5385 2.1250 -0.0004 9 6 4.6429 1.0995 -0.0002 10 1 4.3715 0.2733 -0.6572 11 7 5.8859 1.7185 -0.4796 12 6 4.8473 0.5816 1.4001 13 1 4.2354 0.9541 2.2084 14 6 5.8113 -0.3724 1.6484 15 7 6.5528 -0.8300 0.6633 16 14 6.0651 -1.0139 3.3844 17 1 4.8085 -1.6389 3.8698 18 1 7.1532 -2.0244 3.3845 19 1 6.4357 0.1120 4.2790 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 0.1616 2.3526 0.0107 24 1 0.7211 4.7488 0.0019 25 1 3.0757 5.4654 -0.0099 26 1 4.8776 3.7895 -0.0101 27 1 6.1587 2.4879 0.1132 28 1 6.6258 1.0362 -0.5501 29 1 7.2312 -1.5008 0.8381 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104685184.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:09 Heat of formation + Delta-G solvation = 1.618384 kcal Electronic energy + Delta-G solvation = -13060.506539 eV Core-core repulsion = 10880.550244 eV Total energy + Delta-G solvation = -2179.956295 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04702 -36.54988 -33.56745 -32.05101 -30.87296 -29.56255 -27.89873 -24.71212 -23.47667 -21.53204 -18.58652 -18.50806 -17.05413 -16.53200 -16.32416 -15.46860 -15.24286 -14.87660 -14.67593 -14.49269 -13.84793 -13.64646 -13.22496 -13.08369 -12.94246 -12.78786 -12.45192 -11.98202 -11.85227 -11.62042 -10.79772 -10.61692 -10.45844 -9.56072 -9.19980 -8.22720 -8.04133 -6.30990 0.46266 0.64782 0.82081 1.37367 1.38834 1.46654 1.78980 2.38527 2.97615 3.09675 4.09002 4.14822 4.30512 4.32030 4.34461 4.50216 4.71220 4.84610 4.87353 5.02137 5.14414 5.38119 5.54093 5.65335 5.72905 5.92570 6.07222 6.21826 6.67364 6.92852 7.11475 7.41841 8.86639 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.026100 B = 0.011078 C = 0.009053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.521305 B = 2526.822577 C = 3092.215540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.157 6.157 3 C -0.103 4.103 4 C -0.141 4.141 5 C -0.119 4.119 6 C -0.127 4.127 7 C -0.114 4.114 8 C -0.053 4.053 9 C 0.247 3.753 10 H 0.017 0.983 11 N -0.843 5.843 12 C -0.536 4.536 13 H 0.039 0.961 14 C 0.024 3.976 15 N -0.918 5.918 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.272 1.272 20 H 0.092 0.908 21 H 0.119 0.881 22 H 0.089 0.911 23 H 0.142 0.858 24 H 0.156 0.844 25 H 0.149 0.851 26 H 0.125 0.875 27 H 0.318 0.682 28 H 0.345 0.655 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 6.623 -0.353 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.086 5.914 3 C -0.216 4.216 4 C -0.165 4.165 5 C -0.139 4.139 6 C -0.147 4.147 7 C -0.134 4.134 8 C -0.059 4.059 9 C 0.136 3.864 10 H 0.035 0.965 11 N -0.372 5.372 12 C -0.576 4.576 13 H 0.058 0.942 14 C -0.176 4.176 15 N -0.558 5.558 16 Si 0.778 3.222 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.198 1.198 20 H 0.111 0.889 21 H 0.137 0.863 22 H 0.108 0.892 23 H 0.160 0.840 24 H 0.174 0.826 25 H 0.167 0.833 26 H 0.142 0.858 27 H 0.129 0.871 28 H 0.160 0.840 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.437 5.563 -1.078 11.877 hybrid contribution 0.159 -0.001 1.737 1.745 sum -10.278 5.562 0.659 11.705 Atomic orbital electron populations 1.23762 0.93427 1.07865 1.06025 1.86443 1.07581 1.04983 1.92424 1.21707 0.96404 0.96523 1.06990 1.21373 0.98059 0.93464 1.03554 1.21298 0.97079 0.95151 1.00361 1.21462 0.92674 1.00100 1.00478 1.21087 1.00317 0.91820 1.00186 1.20132 0.93120 0.95914 0.96727 1.17703 0.86341 0.89456 0.92872 0.96491 1.59527 1.08348 1.14327 1.55014 1.21723 1.18124 1.23088 0.94616 0.94250 1.25646 0.95597 0.95759 1.00566 1.69832 1.22692 1.30674 1.32561 0.85697 0.77641 0.78178 0.80652 1.20160 1.20585 1.19774 0.88908 0.86271 0.89213 0.83998 0.82601 0.83292 0.85762 0.87118 0.83998 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.15 113.37 1.04 -2.55 15 2 S -0.16 -6.30 20.73 -56.49 -1.17 -7.47 15 3 C -0.10 -4.24 6.10 22.62 0.14 -4.10 15 4 C -0.14 -4.51 9.36 22.41 0.21 -4.30 15 5 C -0.12 -3.35 10.04 22.25 0.22 -3.13 15 6 C -0.13 -3.88 10.04 22.30 0.22 -3.66 15 7 C -0.11 -4.47 9.25 22.25 0.21 -4.26 15 8 C -0.05 -2.43 5.04 -19.72 -0.10 -2.53 15 9 C 0.25 13.00 2.38 43.42 0.10 13.11 15 10 H 0.02 1.04 7.24 -2.39 -0.02 1.02 15 11 N -0.84 -42.00 8.67 -174.96 -1.52 -43.52 15 12 C -0.54 -29.92 8.40 25.60 0.22 -29.70 15 13 H 0.04 2.27 7.74 -2.91 -0.02 2.24 15 14 C 0.02 1.33 5.38 84.66 0.46 1.79 15 15 N -0.92 -52.35 11.54 21.45 0.25 -52.11 15 16 Si 0.95 44.33 29.54 68.60 2.03 46.36 15 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15 20 H 0.09 2.00 7.76 -2.39 -0.02 1.99 15 21 H 0.12 2.52 8.14 -2.39 -0.02 2.50 15 22 H 0.09 2.02 7.74 -2.39 -0.02 2.01 15 23 H 0.14 3.61 5.88 -2.91 -0.02 3.59 15 24 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 25 H 0.15 3.44 8.06 -2.91 -0.02 3.41 15 26 H 0.12 4.75 6.25 -2.91 -0.02 4.73 15 27 H 0.32 14.81 7.28 -89.70 -0.65 14.16 15 28 H 0.35 18.45 7.08 -89.70 -0.63 17.81 15 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -63.78 256.48 2.18 -61.60 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.12 Total: 34.48 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 2.71 Total: -39.34 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -1.27 Total: -95.62 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -1.17 Total: -7.47 kcal Total: -63.78 2.18 -61.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104685184.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.215 kcal (2) G-P(sol) polarization free energy of solvation -63.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds