Wall clock time and date at job start Mon Mar 30 2020 02:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 103.00225 * 2 1 4 4 C 1.38994 * 120.07447 * 359.97438 * 3 2 1 5 5 C 1.38060 * 119.91580 * 180.02562 * 4 3 2 6 6 C 1.38325 * 120.08257 * 0.02654 * 5 4 3 7 7 C 1.38278 * 120.15889 * 359.97093 * 6 5 4 8 8 C 1.50705 * 119.96094 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47221 * 200.00519 * 8 7 6 10 10 N 1.46899 * 109.46800 * 319.99922 * 8 7 6 11 11 C 1.50702 * 109.47160 * 80.00231 * 8 7 6 12 12 H 1.07993 * 119.99759 * 325.27901 * 11 8 7 13 13 C 1.37874 * 119.99595 * 145.28442 * 11 8 7 14 14 N 1.31516 * 119.99603 * 178.20570 * 13 11 8 15 15 Si 1.86800 * 120.00553 * 358.20258 * 13 11 8 16 16 H 1.48494 * 109.46915 * 268.55672 * 15 13 11 17 17 H 1.48502 * 109.46574 * 28.55607 * 15 13 11 18 18 H 1.48498 * 109.47148 * 148.55418 * 15 13 11 19 19 C 1.38106 * 120.08095 * 0.26264 * 7 6 5 20 20 H 1.08994 * 109.47068 * 60.00078 * 1 2 3 21 21 H 1.09006 * 109.47127 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.46963 * 299.99915 * 1 2 3 23 23 H 1.07998 * 120.04491 * 0.02562 * 4 3 2 24 24 H 1.08007 * 119.96341 * 179.97438 * 5 4 3 25 25 H 1.08003 * 119.92327 * 180.02562 * 6 5 4 26 26 H 1.00904 * 110.99890 * 66.40440 * 10 8 7 27 27 H 1.00903 * 110.99918 * 190.35446 * 10 8 7 28 28 H 0.96999 * 120.00109 * 180.02562 * 14 13 11 29 29 H 1.08004 * 120.04248 * 179.74677 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6661 -0.0005 5 6 1.5095 4.0104 -0.0011 6 6 2.8329 4.4131 -0.0016 7 6 3.8455 3.4714 -0.0010 8 6 5.2858 3.9151 -0.0022 9 1 5.9171 3.0987 -0.3532 10 7 5.4409 5.0721 -0.8939 11 6 5.6939 4.3003 1.3964 12 1 4.9800 4.7690 2.0574 13 6 6.9787 4.0543 1.8319 14 7 7.3452 4.4223 3.0402 15 14 8.1990 3.1983 0.7060 16 1 8.1392 1.7323 0.9346 17 1 7.8577 3.4930 -0.7089 18 1 9.5698 3.6893 0.9972 19 6 3.5386 2.1249 -0.0054 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.1617 2.3525 -0.0005 24 1 0.7212 4.7488 -0.0019 25 1 3.0758 5.4654 -0.0016 26 1 4.9479 5.8752 -0.5332 27 1 6.4158 5.2841 -1.0449 28 1 8.2492 4.2497 3.3465 29 1 4.3300 1.3900 -0.0091 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104685190.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:11 Heat of formation + Delta-G solvation = 17.423672 kcal Electronic energy + Delta-G solvation = -12775.909634 eV Core-core repulsion = 10596.638708 eV Total energy + Delta-G solvation = -2179.270926 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.69887 -34.81812 -32.01450 -30.47575 -30.13676 -28.59063 -26.20767 -22.91872 -22.19148 -20.04305 -17.21890 -16.90105 -15.90307 -15.17977 -14.49446 -14.21132 -14.10601 -13.75882 -13.23898 -12.91610 -12.79005 -12.44622 -12.20723 -11.69906 -11.42128 -11.07062 -10.95458 -10.55214 -10.00096 -9.89493 -9.52742 -9.22272 -8.80101 -8.25303 -7.48269 -7.07954 -6.25009 -4.28929 1.74957 1.79884 1.97815 2.63827 3.18361 3.27608 3.28897 4.25488 4.32458 5.04574 5.05611 5.10198 5.27201 5.38160 5.58482 5.66714 5.95930 5.99709 6.19174 6.24732 6.55439 6.65287 6.80153 7.02829 7.31771 7.47823 7.54406 8.19253 8.28899 8.54982 8.80998 9.35657 10.87377 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.008116 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.457914 B = 3449.143276 C = 3828.979952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.137 6.137 3 C -0.083 4.083 4 C -0.158 4.158 5 C -0.106 4.106 6 C -0.109 4.109 7 C 0.001 3.999 8 C 0.206 3.794 9 H 0.052 0.948 10 N -0.852 5.852 11 C -0.544 4.544 12 H 0.075 0.925 13 C 0.077 3.923 14 N -0.889 5.889 15 Si 0.873 3.127 16 H -0.273 1.273 17 H -0.259 1.259 18 H -0.286 1.286 19 C -0.102 4.102 20 H 0.080 0.920 21 H 0.102 0.898 22 H 0.081 0.919 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.328 0.672 27 H 0.328 0.672 28 H 0.266 0.734 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.842 -4.850 -6.592 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.103 5.897 3 C -0.195 4.195 4 C -0.181 4.181 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.002 4.002 8 C 0.096 3.904 9 H 0.070 0.930 10 N -0.380 5.380 11 C -0.583 4.583 12 H 0.093 0.907 13 C -0.127 4.127 14 N -0.525 5.525 15 Si 0.699 3.301 16 H -0.199 1.199 17 H -0.183 1.183 18 H -0.212 1.212 19 C -0.126 4.126 20 H 0.099 0.901 21 H 0.120 0.880 22 H 0.100 0.900 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.076 0.924 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.422 -6.367 -7.009 14.081 hybrid contribution 0.357 1.088 0.587 1.287 sum -10.065 -5.279 -6.422 13.054 Atomic orbital electron populations 1.23578 0.95545 1.06379 1.05392 1.85352 1.05610 1.05147 1.93545 1.21464 0.96738 0.95088 1.06234 1.20858 0.97210 0.93331 1.06719 1.20923 0.96519 0.94852 1.00332 1.20947 0.91805 0.99788 1.00441 1.20087 0.96937 0.91723 0.91423 1.18467 0.88593 0.91270 0.92041 0.93004 1.59581 1.16659 1.09296 1.52421 1.21590 0.97780 1.41042 0.97910 0.90679 1.25099 0.98160 0.94551 0.94899 1.69905 1.19299 1.45980 1.17366 0.86903 0.80695 0.80604 0.81895 1.19892 1.18306 1.21162 1.20564 0.93631 0.96051 1.02366 0.90074 0.87964 0.90004 0.86921 0.86615 0.86148 0.86056 0.86030 0.92353 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.15 101.05 0.92 -0.54 15 2 S -0.14 -2.06 22.56 -107.50 -2.43 -4.49 15 3 C -0.08 -1.49 6.11 -39.04 -0.24 -1.73 15 4 C -0.16 -2.56 9.36 -39.37 -0.37 -2.93 15 5 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 15 6 C -0.11 -2.10 9.30 -39.53 -0.37 -2.46 15 7 C 0.00 0.02 4.94 -104.65 -0.52 -0.49 15 8 C 0.21 4.77 2.54 -70.01 -0.18 4.60 15 9 H 0.05 1.24 5.17 -51.93 -0.27 0.97 15 10 N -0.85 -17.71 8.97 -6.65 -0.06 -17.77 15 11 C -0.54 -14.71 9.07 -34.44 -0.31 -15.02 15 12 H 0.08 2.25 8.06 -52.49 -0.42 1.82 15 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 14 N -0.89 -26.37 13.96 55.43 0.77 -25.59 15 15 Si 0.87 20.62 26.91 -169.99 -4.57 16.05 15 16 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 17 H -0.26 -5.80 6.37 56.52 0.36 -5.44 15 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 19 C -0.10 -2.09 9.41 -39.37 -0.37 -2.46 15 20 H 0.08 0.78 7.75 -51.93 -0.40 0.38 15 21 H 0.10 0.85 8.14 -51.92 -0.42 0.42 15 22 H 0.08 0.82 7.75 -51.93 -0.40 0.41 15 23 H 0.11 1.49 5.88 -52.49 -0.31 1.18 15 24 H 0.12 1.55 8.06 -52.48 -0.42 1.13 15 25 H 0.12 2.19 6.80 -52.48 -0.36 1.83 15 26 H 0.33 6.45 7.56 -39.29 -0.30 6.15 15 27 H 0.33 6.73 8.59 -39.29 -0.34 6.39 15 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 29 H 0.12 2.43 8.03 -52.48 -0.42 2.00 15 LS Contribution 258.47 15.07 3.90 3.90 Total: -1.00 -29.56 258.47 -7.55 -37.11 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -3.24 Total: 11.94 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -1.92 Total: -21.15 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.71 Total: -43.36 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.57 Total: 16.05 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -2.43 Total: -4.49 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.56 -7.55 -37.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104685190.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.538 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds