Wall clock time and date at job start Mon Mar 30 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00104 * 2 1 4 4 H 1.48501 * 109.47079 * 269.99888 * 3 2 1 5 5 H 1.48500 * 109.47110 * 29.99709 * 3 2 1 6 6 H 1.48505 * 109.47034 * 149.99907 * 3 2 1 7 7 C 1.37875 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99547 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00433 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.87123 * 62.38758 * 9 7 2 11 11 C 1.55139 * 110.98859 * 298.54581 * 9 7 2 12 12 C 1.54316 * 103.01810 * 206.25316 * 11 9 7 13 13 N 1.47446 * 107.23320 * 22.28197 * 12 11 9 14 14 C 1.46900 * 111.00255 * 123.25926 * 13 12 11 15 15 C 1.53005 * 109.47060 * 69.87065 * 14 13 12 16 16 F 1.39896 * 109.46745 * 60.00284 * 15 14 13 17 17 F 1.39897 * 109.46911 * 179.97438 * 15 14 13 18 18 F 1.39895 * 109.47426 * 300.00406 * 15 14 13 19 19 C 1.47843 * 108.56761 * 0.99070 * 13 12 11 20 20 H 0.96999 * 119.99481 * 0.02562 * 1 2 3 21 21 H 1.08999 * 110.70823 * 87.87009 * 11 9 7 22 22 H 1.09003 * 110.70684 * 324.63164 * 11 9 7 23 23 H 1.08997 * 109.89177 * 262.87868 * 12 11 9 24 24 H 1.08995 * 110.02481 * 141.76401 * 12 11 9 25 25 H 1.08991 * 109.47253 * 189.87372 * 14 13 12 26 26 H 1.08999 * 109.46647 * 309.87636 * 14 13 12 27 27 H 1.08998 * 110.37465 * 94.73106 * 19 13 12 28 28 H 1.09003 * 110.37404 * 217.07863 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6484 -2.5997 -0.9022 11 6 0.3733 -2.6341 1.2726 12 6 0.2530 -4.1621 1.4515 13 7 1.3917 -4.7757 0.7438 14 6 2.1854 -5.6149 1.6514 15 6 1.3823 -6.8624 2.0257 16 9 1.0783 -7.5860 0.8677 17 9 2.1384 -7.6618 2.8896 18 9 0.1963 -6.4801 2.6615 19 6 2.2185 -3.6985 0.1593 20 1 -0.4849 0.8401 -0.0004 21 1 -0.6077 -2.1863 1.1133 22 1 0.8689 -2.1832 2.1324 23 1 -0.6844 -4.5133 1.0203 24 1 0.2929 -4.4182 2.5102 25 1 3.1094 -5.9128 1.1560 26 1 2.4221 -5.0510 2.5536 27 1 3.0360 -3.4400 0.8322 28 1 2.6075 -4.0034 -0.8123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107462693.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:03 Heat of formation + Delta-G solvation = -174.316962 kcal Electronic energy + Delta-G solvation = -15837.512762 eV Core-core repulsion = 12665.317727 eV Total energy + Delta-G solvation = -3172.195035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -51.02714 -48.58314 -48.46927 -39.78725 -35.28839 -32.95638 -30.07882 -29.04447 -26.25485 -24.04078 -21.80057 -21.60617 -19.48451 -19.38763 -18.62730 -17.84081 -16.81615 -16.57394 -16.10873 -15.40700 -15.29314 -14.94273 -14.74763 -14.65097 -14.32879 -14.31177 -14.11995 -13.91205 -13.01537 -12.93091 -12.78311 -12.44057 -12.33663 -11.95707 -11.49649 -11.19605 -10.89457 -10.49856 -9.42254 -8.13504 -6.24478 1.43158 1.44288 1.53772 1.79445 2.42431 2.68488 2.94556 3.13333 3.18560 3.54990 4.01269 4.12014 4.32071 4.43241 4.45831 4.64195 4.80725 5.01697 5.20116 5.28759 5.59964 5.77629 5.79875 5.94396 5.99161 6.32655 6.85292 7.44113 8.95566 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.065452 B = 0.006604 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.689234 B = 4238.535902 C = 4361.453214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.036 3.964 10 H 0.004 0.996 11 C -0.109 4.109 12 C 0.039 3.961 13 N -0.536 5.536 14 C 0.005 3.995 15 C 0.461 3.539 16 F -0.183 7.183 17 F -0.183 7.183 18 F -0.190 7.190 19 C 0.063 3.937 20 H 0.260 0.740 21 H 0.048 0.952 22 H 0.039 0.961 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.137 0.863 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.274 -10.885 4.872 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.017 3.983 10 H 0.023 0.977 11 C -0.148 4.148 12 C -0.089 4.089 13 N -0.260 5.260 14 C -0.125 4.125 15 C 0.406 3.594 16 F -0.165 7.165 17 F -0.165 7.165 18 F -0.171 7.171 19 C -0.063 4.063 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.155 0.845 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.924 -11.136 4.492 12.632 hybrid contribution 0.137 1.319 0.581 1.448 sum 4.061 -9.816 5.074 11.773 Atomic orbital electron populations 1.70099 1.07358 1.27300 1.50984 1.25760 0.95610 1.02507 0.94633 0.85583 0.78774 0.79266 0.78185 1.20257 1.21258 1.18922 1.21388 0.93180 0.91387 1.51120 0.92129 1.19716 0.92953 0.92274 0.93375 0.97734 1.22494 1.00444 0.93073 0.98785 1.23073 0.94110 0.94324 0.97375 1.63517 1.09239 1.22205 1.31043 1.23463 0.97302 0.91632 1.00100 1.20569 0.78501 0.86159 0.74162 1.93168 1.93660 1.79998 1.49649 1.93170 1.75872 1.76306 1.71103 1.93138 1.50294 1.90858 1.82833 1.22999 0.95220 0.89297 0.98832 0.93063 0.93358 0.94190 0.91524 0.91317 0.84461 0.89061 0.92895 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.50 12.12 21.45 0.26 -52.24 15 2 C 0.01 0.76 5.34 84.65 0.45 1.22 15 3 Si 0.96 42.40 29.54 68.60 2.03 44.43 15 4 H -0.28 -12.05 7.11 99.48 0.71 -11.35 15 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 7 C -0.53 -28.17 8.55 25.60 0.22 -27.95 15 8 H 0.06 3.08 7.79 -2.91 -0.02 3.06 15 9 C 0.04 1.75 2.96 -10.16 -0.03 1.72 15 10 H 0.00 0.25 8.14 -2.39 -0.02 0.23 15 11 C -0.11 -4.99 5.64 31.77 0.18 -4.81 15 12 C 0.04 1.43 5.63 86.64 0.49 1.92 15 13 N -0.54 -18.41 5.08 -885.56 -4.50 -22.91 15 14 C 0.01 0.13 4.71 86.30 0.41 0.54 15 15 C 0.46 12.12 3.27 71.98 0.24 12.36 15 16 F -0.18 -5.29 17.24 44.97 0.78 -4.52 15 17 F -0.18 -4.41 17.32 44.97 0.78 -3.63 15 18 F -0.19 -5.48 14.48 44.97 0.65 -4.83 15 19 C 0.06 2.40 6.12 86.77 0.53 2.93 15 20 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 21 H 0.05 2.45 7.54 -2.39 -0.02 2.43 15 22 H 0.04 1.87 8.03 -2.39 -0.02 1.85 15 23 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.07 2.28 5.98 -2.39 -0.01 2.27 15 25 H 0.14 2.89 8.07 -2.39 -0.02 2.88 15 26 H 0.09 2.18 7.96 -2.39 -0.02 2.16 15 27 H 0.05 1.91 7.70 -2.39 -0.02 1.89 15 28 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 Total: -1.00 -57.71 245.12 3.63 -54.07 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.16 Total: 1.70 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 2.48 Total: -12.09 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -4.24 Total: -75.15 kcal Atomic # 9 Polarization: -15.18 SS G_CDS: 2.21 Total: -12.97 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -57.71 3.63 -54.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107462693.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.244 kcal (2) G-P(sol) polarization free energy of solvation -57.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds