Wall clock time and date at job start Mon Mar 30 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37844 * 125.89871 * 2 1 4 4 C 1.47113 * 127.02391 * 359.97037 * 3 2 1 5 5 O 1.21552 * 119.99454 * 359.71712 * 4 3 2 6 6 O 1.34778 * 120.00338 * 179.71549 * 4 3 2 7 7 C 1.46745 * 105.95458 * 179.71698 * 3 2 1 8 8 C 1.34430 * 106.37200 * 0.25475 * 7 3 2 9 9 N 1.34628 * 125.89602 * 180.15920 * 2 1 3 10 10 C 1.46494 * 124.81165 * 0.03388 * 9 2 1 11 11 C 1.53003 * 109.47607 * 85.28328 * 10 9 2 12 12 C 1.50693 * 109.47286 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00187 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99713 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00010 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46876 * 89.99988 * 16 14 12 18 18 H 1.48501 * 109.47141 * 210.00244 * 16 14 12 19 19 H 1.48499 * 109.47094 * 330.00040 * 16 14 12 20 20 H 1.08990 * 109.47024 * 90.02672 * 1 2 3 21 21 H 1.08997 * 109.47245 * 210.03165 * 1 2 3 22 22 H 1.08997 * 109.46796 * 330.02655 * 1 2 3 23 23 H 0.96700 * 117.00264 * 180.02562 * 6 4 3 24 24 H 1.07995 * 126.81560 * 180.26109 * 7 3 2 25 25 H 1.08006 * 125.45849 * 180.02562 * 8 7 3 26 26 H 1.09005 * 109.47608 * 205.28810 * 10 9 2 27 27 H 1.09008 * 109.47201 * 325.28235 * 10 9 2 28 28 H 1.09001 * 109.46581 * 300.00655 * 11 10 9 29 29 H 1.09003 * 109.46491 * 59.99870 * 11 10 9 30 30 H 0.97004 * 119.99775 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.1166 0.0000 4 6 1.8833 2.5229 -0.0006 5 8 0.6985 2.7946 -0.0064 6 8 2.8010 3.5099 0.0053 7 6 3.6947 0.6161 0.0070 8 6 3.6110 -0.7256 0.0048 9 7 2.2964 -1.0906 -0.0030 10 6 1.8124 -2.4733 -0.0076 11 6 1.5326 -2.9111 -1.4467 12 6 1.0341 -4.3332 -1.4512 13 1 0.9271 -4.8709 -0.5207 14 6 0.7146 -4.9479 -2.6434 15 7 0.2791 -6.1888 -2.6473 16 14 0.9004 -4.0180 -4.2528 17 1 2.2663 -4.2334 -4.7941 18 1 -0.1029 -4.5134 -5.2293 19 1 0.6852 -2.5682 -4.0146 20 1 -0.3633 -0.0005 -1.0276 21 1 -0.3633 -0.8897 0.5143 22 1 -0.3633 0.8902 0.5134 23 1 2.4691 4.4181 0.0050 24 1 4.5979 1.2081 0.0128 25 1 4.4500 -1.4058 0.0089 26 1 2.5691 -3.1247 0.4297 27 1 0.8947 -2.5390 0.5771 28 1 0.7758 -2.2597 -1.8839 29 1 2.4502 -2.8454 -2.0313 30 1 0.0540 -6.6211 -3.4860 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108236188.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:02 Heat of formation + Delta-G solvation = -59.867997 kcal Electronic energy + Delta-G solvation = -14826.979300 eV Core-core repulsion = 12201.603884 eV Total energy + Delta-G solvation = -2625.375415 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.12238 -39.38166 -35.78108 -34.29205 -32.30987 -31.36764 -29.57871 -26.45809 -25.31393 -22.97683 -21.14283 -20.42126 -18.53664 -17.71848 -17.08935 -16.51451 -15.46464 -15.13687 -14.68387 -14.08130 -13.98956 -13.24258 -12.89769 -12.78591 -12.61818 -12.46431 -12.36603 -11.66086 -11.34350 -11.29892 -11.17587 -10.52562 -10.29844 -10.26783 -10.00308 -9.49856 -8.73038 -8.34828 -7.94998 -6.23730 -4.25800 1.73532 2.67596 3.03308 3.19788 3.28484 3.32280 3.54308 3.65393 4.29225 5.00229 5.09177 5.17468 5.30418 5.41398 5.72270 5.76525 5.87905 5.94214 6.12766 6.15650 6.25815 6.36314 6.71370 6.89514 6.95442 6.97452 7.41108 7.43403 7.61644 8.23971 8.26382 8.76620 9.36629 10.88624 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.006647 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.448180 B = 4211.282261 C = 4331.275553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.129 3.871 3 C -0.254 4.254 4 C 0.560 3.440 5 O -0.538 6.538 6 O -0.517 6.517 7 C -0.155 4.155 8 C -0.018 4.018 9 N -0.423 5.423 10 C 0.104 3.896 11 C -0.023 4.023 12 C -0.530 4.530 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.895 5.895 16 Si 0.878 3.122 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.265 1.265 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.405 0.595 24 H 0.146 0.854 25 H 0.167 0.833 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.025 0.975 29 H 0.020 0.980 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 13.553 5.085 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.008 3.992 3 C -0.262 4.262 4 C 0.408 3.592 5 O -0.430 6.430 6 O -0.327 6.327 7 C -0.178 4.178 8 C -0.145 4.145 9 N -0.096 5.096 10 C -0.015 4.015 11 C -0.061 4.061 12 C -0.569 4.569 13 H 0.094 0.906 14 C -0.128 4.128 15 N -0.532 5.532 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.190 1.190 20 H 0.099 0.901 21 H 0.091 0.909 22 H 0.112 0.888 23 H 0.262 0.738 24 H 0.163 0.837 25 H 0.184 0.816 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.665 12.679 4.969 14.395 hybrid contribution 0.010 0.850 -0.997 1.310 sum 4.675 13.529 3.972 14.855 Atomic orbital electron populations 1.20610 0.87097 1.03959 1.03854 1.20598 0.93820 0.85159 0.99610 1.19157 0.93968 0.88169 1.24861 1.19883 0.82689 0.85342 0.71292 1.90829 1.18471 1.84638 1.49018 1.84606 1.42460 1.19171 1.86501 1.21902 0.95444 0.93133 1.07326 1.21779 0.86077 0.96042 1.10589 1.44271 1.05794 1.07388 1.52151 1.22305 1.00728 0.76489 1.02003 1.19917 0.97398 0.98120 0.90647 1.20841 1.45311 0.95386 0.95321 0.90570 1.24943 0.94076 0.94659 0.99123 1.69889 1.44046 1.11915 1.27365 0.86805 0.78339 0.80838 0.83549 1.20083 1.21021 1.18973 0.90059 0.90938 0.88817 0.73846 0.83674 0.81597 0.89118 0.89403 0.95715 0.96162 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 9.54 36.01 0.34 -1.18 16 2 C 0.13 2.21 6.93 -81.51 -0.56 1.64 16 3 C -0.25 -4.22 6.33 -103.01 -0.65 -4.88 16 4 C 0.56 8.81 8.32 34.33 0.29 9.09 16 5 O -0.54 -9.40 15.66 -19.31 -0.30 -9.70 16 6 O -0.52 -6.29 13.33 -40.70 -0.54 -6.83 16 7 C -0.15 -2.32 11.00 -37.49 -0.41 -2.73 16 8 C -0.02 -0.28 11.30 -16.85 -0.19 -0.47 16 9 N -0.42 -7.16 2.68 -112.24 -0.30 -7.47 16 10 C 0.10 1.86 5.67 -4.04 -0.02 1.84 16 11 C -0.02 -0.51 4.36 -27.89 -0.12 -0.63 16 12 C -0.53 -14.04 9.66 -34.44 -0.33 -14.38 16 13 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 16 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 20 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 21 H 0.07 1.04 7.03 -51.93 -0.36 0.68 16 22 H 0.09 1.42 6.52 -51.93 -0.34 1.09 16 23 H 0.40 2.88 9.11 45.56 0.42 3.30 16 24 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 25 H 0.17 2.06 8.06 -52.48 -0.42 1.64 16 26 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 27 H 0.09 1.50 7.05 -51.92 -0.37 1.13 16 28 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 29 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 265.60 15.07 4.00 4.00 Total: -1.00 -31.55 265.60 -5.50 -37.06 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.70 Total: 1.85 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.77 Total: -9.70 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.47 Total: -33.05 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.85 Total: -16.53 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.55 -5.50 -37.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108236188.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.812 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds