Wall clock time and date at job start Mon Mar 30 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37844 * 125.89871 * 2 1 4 4 C 1.47113 * 127.02391 * 359.97037 * 3 2 1 5 5 O 1.21552 * 119.99454 * 359.71712 * 4 3 2 6 6 O 1.34778 * 120.00338 * 179.71549 * 4 3 2 7 7 C 1.46745 * 105.95458 * 179.71698 * 3 2 1 8 8 C 1.34430 * 106.37200 * 0.25475 * 7 3 2 9 9 N 1.34628 * 125.89602 * 180.15920 * 2 1 3 10 10 C 1.46494 * 124.81165 * 0.03388 * 9 2 1 11 11 C 1.53003 * 109.47607 * 85.28328 * 10 9 2 12 12 C 1.50693 * 109.47286 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00187 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99713 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00010 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46876 * 89.99988 * 16 14 12 18 18 H 1.48501 * 109.47141 * 210.00244 * 16 14 12 19 19 H 1.48499 * 109.47094 * 330.00040 * 16 14 12 20 20 H 1.08990 * 109.47024 * 90.02672 * 1 2 3 21 21 H 1.08997 * 109.47245 * 210.03165 * 1 2 3 22 22 H 1.08997 * 109.46796 * 330.02655 * 1 2 3 23 23 H 0.96700 * 117.00264 * 180.02562 * 6 4 3 24 24 H 1.07995 * 126.81560 * 180.26109 * 7 3 2 25 25 H 1.08006 * 125.45849 * 180.02562 * 8 7 3 26 26 H 1.09005 * 109.47608 * 205.28810 * 10 9 2 27 27 H 1.09008 * 109.47201 * 325.28235 * 10 9 2 28 28 H 1.09001 * 109.46581 * 300.00655 * 11 10 9 29 29 H 1.09003 * 109.46491 * 59.99870 * 11 10 9 30 30 H 0.97004 * 119.99775 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.1166 0.0000 4 6 1.8833 2.5229 -0.0006 5 8 0.6985 2.7946 -0.0064 6 8 2.8010 3.5099 0.0053 7 6 3.6947 0.6161 0.0070 8 6 3.6110 -0.7256 0.0048 9 7 2.2964 -1.0906 -0.0030 10 6 1.8124 -2.4733 -0.0076 11 6 1.5326 -2.9111 -1.4467 12 6 1.0341 -4.3332 -1.4512 13 1 0.9271 -4.8709 -0.5207 14 6 0.7146 -4.9479 -2.6434 15 7 0.2791 -6.1888 -2.6473 16 14 0.9004 -4.0180 -4.2528 17 1 2.2663 -4.2334 -4.7941 18 1 -0.1029 -4.5134 -5.2293 19 1 0.6852 -2.5682 -4.0146 20 1 -0.3633 -0.0005 -1.0276 21 1 -0.3633 -0.8897 0.5143 22 1 -0.3633 0.8902 0.5134 23 1 2.4691 4.4181 0.0050 24 1 4.5979 1.2081 0.0128 25 1 4.4500 -1.4058 0.0089 26 1 2.5691 -3.1247 0.4297 27 1 0.8947 -2.5390 0.5771 28 1 0.7758 -2.2597 -1.8839 29 1 2.4502 -2.8454 -2.0313 30 1 0.0540 -6.6211 -3.4860 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108236188.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:02 Heat of formation + Delta-G solvation = -79.913230 kcal Electronic energy + Delta-G solvation = -14827.848526 eV Core-core repulsion = 12201.603884 eV Total energy + Delta-G solvation = -2626.244642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.34691 -40.53931 -36.88783 -36.00189 -34.12405 -32.57415 -31.19810 -27.71757 -26.89453 -24.33503 -22.78378 -21.61534 -19.85050 -19.13389 -18.61364 -17.85902 -16.79161 -16.43448 -16.34176 -15.56658 -15.36906 -14.73445 -14.55255 -14.16628 -13.90804 -13.71507 -13.62835 -13.27302 -12.96667 -12.50772 -12.44660 -12.21421 -12.03173 -11.84716 -11.56900 -11.44810 -10.83507 -9.62521 -9.15357 -8.35940 -6.41344 0.50041 1.31028 1.34730 1.43945 1.49964 1.81596 2.29348 2.34390 2.56337 2.99900 3.76869 3.93029 4.07463 4.21418 4.29553 4.57355 4.63191 4.67046 4.68873 4.93271 5.02538 5.17920 5.22524 5.25283 5.49083 5.71468 5.80674 6.13340 6.18229 6.32508 6.66527 7.19666 7.24345 8.79666 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.006647 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.448180 B = 4211.282261 C = 4331.275553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.106 3.894 3 C -0.270 4.270 4 C 0.563 3.437 5 O -0.562 6.562 6 O -0.507 6.507 7 C -0.152 4.152 8 C -0.023 4.023 9 N -0.430 5.430 10 C 0.116 3.884 11 C -0.017 4.017 12 C -0.530 4.530 13 H 0.049 0.951 14 C 0.018 3.982 15 N -0.941 5.941 16 Si 0.939 3.061 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.257 1.257 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.427 0.573 24 H 0.170 0.830 25 H 0.193 0.807 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.018 0.982 29 H 0.021 0.979 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.289 15.193 4.876 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.014 4.014 3 C -0.278 4.278 4 C 0.411 3.589 5 O -0.456 6.456 6 O -0.320 6.320 7 C -0.175 4.175 8 C -0.149 4.149 9 N -0.104 5.104 10 C -0.004 4.004 11 C -0.055 4.055 12 C -0.569 4.569 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.581 5.581 16 Si 0.763 3.237 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.181 1.181 20 H 0.093 0.907 21 H 0.097 0.903 22 H 0.112 0.888 23 H 0.288 0.712 24 H 0.187 0.813 25 H 0.210 0.790 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.019 14.368 4.773 16.292 hybrid contribution -0.362 0.397 -0.855 1.009 sum 5.657 14.765 3.918 16.290 Atomic orbital electron populations 1.20574 0.86793 1.04292 1.03496 1.20867 0.94422 0.85599 1.00494 1.19507 0.94941 0.88705 1.24634 1.19806 0.82570 0.85733 0.70795 1.90819 1.19524 1.85086 1.50185 1.84541 1.41453 1.20289 1.85682 1.22220 0.95512 0.93263 1.06473 1.22323 0.85937 0.96802 1.09829 1.44201 1.06554 1.06653 1.52964 1.22007 1.01674 0.77543 0.99203 1.19770 0.96825 0.95272 0.93626 1.21164 1.44221 0.97286 0.94182 0.93239 1.25785 0.94102 0.95389 1.02782 1.70019 1.46019 1.13726 1.28341 0.85824 0.78595 0.79828 0.79413 1.19155 1.20861 1.18057 0.90716 0.90294 0.88788 0.71186 0.81270 0.78978 0.87743 0.88976 0.96329 0.96023 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.54 71.24 0.68 -2.20 16 2 C 0.11 3.49 6.93 42.04 0.29 3.78 16 3 C -0.27 -8.45 6.33 -18.82 -0.12 -8.57 16 4 C 0.56 16.63 8.32 70.15 0.58 17.21 16 5 O -0.56 -18.98 15.66 19.67 0.31 -18.67 16 6 O -0.51 -10.92 13.33 -56.89 -0.76 -11.67 16 7 C -0.15 -4.10 11.00 23.62 0.26 -3.84 16 8 C -0.02 -0.63 11.30 83.11 0.94 0.30 16 9 N -0.43 -13.70 2.68 -509.02 -1.37 -15.06 16 10 C 0.12 3.97 5.67 86.38 0.49 4.46 16 11 C -0.02 -0.73 4.36 29.85 0.13 -0.60 16 12 C -0.53 -28.09 9.66 25.60 0.25 -27.84 16 13 H 0.05 2.82 7.99 -2.91 -0.02 2.79 16 14 C 0.02 1.00 5.47 84.66 0.46 1.46 16 15 N -0.94 -56.26 13.96 21.45 0.30 -55.96 16 16 Si 0.94 42.96 27.47 68.60 1.88 44.84 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.27 6.54 99.48 0.65 -10.62 16 20 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.08 2.23 7.03 -2.39 -0.02 2.21 16 22 H 0.09 2.82 6.52 -2.39 -0.02 2.80 16 23 H 0.43 4.84 9.11 -74.06 -0.67 4.17 16 24 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 25 H 0.19 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.10 3.28 8.11 -2.38 -0.02 3.26 16 27 H 0.09 3.05 7.05 -2.38 -0.02 3.03 16 28 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 29 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 30 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -66.65 265.60 4.76 -61.89 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.43 Total: 10.48 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 3.97 Total: -15.84 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.07 Total: -71.03 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.45 Total: -30.35 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -66.65 4.76 -61.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108236188.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.026 kcal (2) G-P(sol) polarization free energy of solvation -66.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds