Wall clock time and date at job start Mon Mar 30 2020 03:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99574 * 2 1 4 4 H 1.48505 * 109.47015 * 265.55093 * 3 2 1 5 5 H 1.48495 * 109.47472 * 25.55571 * 3 2 1 6 6 H 1.48504 * 109.47004 * 145.56043 * 3 2 1 7 7 C 1.38812 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00360 * 338.57670 * 7 2 1 9 9 N 1.36936 * 119.99668 * 158.57587 * 7 2 1 10 10 C 1.45418 * 120.46322 * 337.52925 * 9 7 2 11 11 C 1.53529 * 109.48150 * 212.62505 * 10 9 7 12 12 C 1.52963 * 109.55959 * 61.18065 * 11 10 9 13 13 H 1.09007 * 109.24741 * 35.71734 * 12 11 10 14 14 O 1.42900 * 109.25345 * 155.13417 * 12 11 10 15 15 C 1.50792 * 110.60815 * 275.42658 * 12 11 10 16 16 C 1.41521 * 125.37237 * 208.76156 * 15 12 11 17 17 C 1.34493 * 106.96506 * 181.73244 * 16 15 12 18 18 O 1.34351 * 108.43220 * 359.84220 * 17 16 15 19 19 C 1.34001 * 109.36832 * 358.79541 * 18 17 16 20 20 C 1.46736 * 120.46366 * 157.50867 * 9 7 2 21 21 H 0.96998 * 120.00464 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.44599 * 92.63527 * 10 9 7 23 23 H 1.09005 * 109.48293 * 332.63909 * 10 9 7 24 24 H 1.08999 * 109.45209 * 301.15515 * 11 10 9 25 25 H 1.09001 * 109.45520 * 181.20458 * 11 10 9 26 26 H 0.96693 * 114.00454 * 180.02562 * 14 12 11 27 27 H 1.07996 * 126.51704 * 1.73966 * 16 15 12 28 28 H 1.08001 * 125.78295 * 179.85776 * 17 16 15 29 29 H 1.09002 * 109.61528 * 333.16174 * 20 9 7 30 30 H 1.09004 * 109.76061 * 212.72203 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5916 1.9922 -1.3959 5 1 1.4037 2.6780 0.6039 6 1 3.4976 1.4692 0.7918 7 6 2.0103 -1.2022 0.0005 8 1 1.5263 -2.1050 0.3425 9 7 3.3086 -1.2433 -0.4326 10 6 3.8214 -0.2149 -1.3238 11 6 4.8709 -0.8274 -2.2622 12 6 4.2227 -1.9234 -3.1097 13 1 3.2001 -1.6332 -3.3514 14 8 4.9647 -2.0837 -4.3204 15 6 4.2042 -3.2322 -2.3610 16 6 4.2371 -4.5163 -2.9550 17 6 4.1669 -5.4131 -1.9551 18 8 4.0969 -4.7465 -0.7907 19 6 4.1479 -3.4288 -1.0293 20 6 4.2021 -2.3253 -0.0037 21 1 -0.4851 0.8400 -0.0004 22 1 4.2800 0.5797 -0.7352 23 1 3.0023 0.1963 -1.9139 24 1 5.6801 -1.2563 -1.6711 25 1 5.2705 -0.0518 -2.9156 26 1 4.6119 -2.7633 -4.9109 27 1 4.3057 -4.7346 -4.0104 28 1 4.1670 -6.4871 -2.0689 29 1 3.8754 -2.7080 0.9633 30 1 5.2225 -1.9506 0.0770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145726320.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:49 Heat of formation + Delta-G solvation = -26.724351 kcal Electronic energy + Delta-G solvation = -15870.162601 eV Core-core repulsion = 13246.224402 eV Total energy + Delta-G solvation = -2623.938199 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.50462 -39.44635 -37.60402 -34.37879 -33.55441 -32.34696 -31.41021 -27.74883 -26.41721 -24.64705 -22.29404 -21.98057 -20.75294 -19.05935 -18.63926 -17.74685 -17.00431 -16.88666 -16.34411 -15.84144 -15.20751 -15.08501 -14.76306 -14.17570 -13.99613 -13.59711 -13.48270 -13.11212 -12.79321 -12.56972 -12.25731 -12.10970 -11.81508 -11.47451 -11.17143 -10.85646 -10.48576 -9.30205 -9.07173 -8.20177 -5.55502 0.89997 1.33028 1.42877 1.51663 1.68573 2.14359 2.40010 3.03708 3.21074 3.36757 3.80146 3.89148 3.99262 4.09212 4.33120 4.40510 4.54938 4.58694 4.69895 4.76167 4.89022 4.96502 5.13270 5.17095 5.33201 5.66829 5.76391 6.05804 6.31426 6.77729 6.80836 7.53703 7.86093 8.99121 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033161 B = 0.011228 C = 0.009635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.150094 B = 2493.094956 C = 2905.463201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.029 4.029 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.310 1.310 6 H -0.259 1.259 7 C -0.259 4.259 8 H 0.049 0.951 9 N -0.599 5.599 10 C 0.120 3.880 11 C -0.117 4.117 12 C 0.192 3.808 13 H 0.041 0.959 14 O -0.566 6.566 15 C -0.225 4.225 16 C -0.219 4.219 17 C -0.052 4.052 18 O -0.190 6.190 19 C -0.026 4.026 20 C 0.216 3.784 21 H 0.264 0.736 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.389 0.611 27 H 0.172 0.828 28 H 0.240 0.760 29 H 0.072 0.928 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 -6.326 -6.292 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.224 4.224 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.239 1.239 6 H -0.184 1.184 7 C -0.387 4.387 8 H 0.067 0.933 9 N -0.322 5.322 10 C -0.005 4.005 11 C -0.155 4.155 12 C 0.133 3.867 13 H 0.058 0.942 14 O -0.374 6.374 15 C -0.227 4.227 16 C -0.238 4.238 17 C -0.119 4.119 18 O -0.086 6.086 19 C -0.079 4.079 20 C 0.089 3.911 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.238 0.762 27 H 0.189 0.811 28 H 0.256 0.744 29 H 0.090 0.910 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.021 -5.875 -5.736 14.558 hybrid contribution -0.811 0.191 -0.320 0.893 sum 11.210 -5.684 -6.056 13.952 Atomic orbital electron populations 1.69984 1.07557 1.27537 1.54765 1.25777 0.95765 1.01097 0.99747 0.86006 0.78118 0.79492 0.78659 1.19219 1.23916 1.18371 1.18726 0.86941 0.93976 1.39103 0.93311 1.44018 1.09328 1.26162 1.52736 1.21374 0.96095 0.91411 0.91591 1.21975 0.98163 0.97862 0.97543 1.19718 0.93505 0.90075 0.83401 0.94171 1.86438 1.57546 1.62466 1.30906 1.21130 1.10427 0.97237 0.93918 1.21951 1.08941 0.91215 1.01704 1.24731 1.05915 0.99689 0.81550 1.83963 1.71381 1.18065 1.35212 1.23980 1.03944 0.82542 0.97474 1.19441 0.95502 0.83437 0.92734 0.92718 0.94148 0.93255 0.90115 0.88675 0.76218 0.81100 0.74358 0.90992 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 13.97 21.65 0.30 -59.41 16 2 C -0.03 -1.66 5.23 84.86 0.44 -1.21 16 3 Si 0.95 45.31 23.99 68.60 1.65 46.96 16 4 H -0.27 -11.85 6.42 99.48 0.64 -11.22 16 5 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.26 -11.63 6.67 99.48 0.66 -10.97 16 7 C -0.26 -14.65 10.10 84.03 0.85 -13.80 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 9 N -0.60 -27.82 2.43 -707.30 -1.72 -29.54 16 10 C 0.12 4.97 3.80 86.76 0.33 5.30 16 11 C -0.12 -4.00 5.25 30.76 0.16 -3.84 16 12 C 0.19 6.72 3.44 29.86 0.10 6.82 16 13 H 0.04 1.61 7.88 -2.38 -0.02 1.59 16 14 O -0.57 -16.64 13.13 -148.98 -1.96 -18.59 16 15 C -0.23 -8.03 5.58 -19.83 -0.11 -8.14 16 16 C -0.22 -6.28 10.19 22.22 0.23 -6.05 16 17 C -0.05 -1.42 12.08 66.96 0.81 -0.62 16 18 O -0.19 -6.71 10.65 -0.06 0.00 -6.71 16 19 C -0.03 -1.00 6.98 24.90 0.17 -0.83 16 20 C 0.22 8.40 5.71 85.60 0.49 8.89 16 21 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 22 H 0.04 1.63 5.51 -2.39 -0.01 1.62 16 23 H 0.05 2.26 5.68 -2.38 -0.01 2.25 16 24 H 0.08 2.56 6.33 -2.39 -0.02 2.55 16 25 H 0.09 2.88 8.10 -2.39 -0.02 2.86 16 26 H 0.39 8.25 8.11 -74.06 -0.60 7.65 16 27 H 0.17 3.60 7.52 -2.91 -0.02 3.58 16 28 H 0.24 3.94 8.06 -2.91 -0.02 3.91 16 29 H 0.07 2.83 8.03 -2.39 -0.02 2.81 16 30 H 0.10 3.39 6.93 -2.39 -0.02 3.37 16 Total: -1.00 -69.45 241.24 2.20 -67.25 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.45 Total: 13.53 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 3.47 Total: -13.47 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -1.41 Total: -88.95 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.96 Total: -25.31 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.65 Total: 46.96 kcal Total: -69.45 2.20 -67.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145726320.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.521 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds