Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99497 * 2 1 4 4 H 1.48509 * 109.46855 * 269.99445 * 3 2 1 5 5 H 1.48498 * 109.47321 * 29.99533 * 3 2 1 6 6 H 1.48504 * 109.47104 * 149.99803 * 3 2 1 7 7 C 1.37877 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99929 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.37214 * 123.57680 * 269.99794 * 10 9 7 12 12 O 1.21226 * 127.70301 * 346.78128 * 11 10 9 13 13 C 1.44983 * 104.59497 * 166.75780 * 11 10 9 14 14 H 1.09003 * 104.22639 * 292.87893 * 13 11 10 15 15 C 1.47469 * 137.59106 * 160.98640 * 13 11 10 16 16 C 1.56255 * 103.63403 * 199.70418 * 15 13 11 17 17 C 1.56216 * 105.71728 * 5.74477 * 16 15 13 18 18 C 1.53637 * 101.97510 * 26.56171 * 17 16 15 19 19 H 1.09000 * 113.26887 * 75.00108 * 18 17 16 20 20 C 1.36587 * 123.57710 * 89.99485 * 10 9 7 21 21 O 1.21225 * 127.13355 * 343.73977 * 20 10 9 22 22 H 0.97001 * 120.00605 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 59.99298 * 9 7 2 24 24 H 1.09001 * 109.46815 * 299.99692 * 9 7 2 25 25 H 1.09002 * 110.59361 * 81.17002 * 15 13 11 26 26 H 1.08996 * 110.59450 * 318.23702 * 15 13 11 27 27 H 1.09002 * 110.21421 * 124.83227 * 16 15 13 28 28 H 1.08999 * 110.21390 * 246.66243 * 16 15 13 29 29 H 1.09004 * 110.91108 * 144.77951 * 17 16 15 30 30 H 1.08996 * 110.91415 * 268.38897 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6963 -4.1894 -1.1427 12 8 2.2905 -4.0524 -2.2767 13 6 3.8113 -4.9990 -0.6917 14 1 4.5465 -4.2728 -0.3448 15 6 4.6101 -6.1307 -1.1977 16 6 5.2655 -6.7240 0.0907 17 6 4.6431 -5.9325 1.2851 18 6 3.2852 -5.5023 0.7093 19 1 2.5622 -6.3162 0.6572 20 6 2.6941 -4.1867 1.1385 21 8 2.6606 -3.7309 2.2613 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 5.3753 -5.7804 -1.8905 26 1 3.9676 -6.8698 -1.6761 27 1 5.0304 -7.7848 0.1785 28 1 6.3455 -6.5790 0.0649 29 1 4.5118 -6.5782 2.1534 30 1 5.2524 -5.0644 1.5362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163508922.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = -47.340504 kcal Electronic energy + Delta-G solvation = -15453.819554 eV Core-core repulsion = 12828.987371 eV Total energy + Delta-G solvation = -2624.832182 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.79658 -37.81630 -37.28178 -34.97255 -32.90295 -30.00224 -29.12298 -26.66818 -24.18053 -23.18809 -20.76461 -20.40427 -18.48732 -17.56722 -16.61510 -16.07923 -15.05599 -15.03654 -14.85319 -14.39792 -13.71031 -13.42426 -12.94012 -12.82139 -12.40944 -12.22730 -11.56601 -11.39041 -11.30388 -11.02779 -10.88606 -10.78734 -10.46717 -10.29483 -9.98100 -9.51643 -9.41764 -8.53229 -8.48343 -6.15642 -4.21477 2.11372 3.07317 3.27559 3.31956 3.33612 3.41226 3.73651 4.33573 4.37948 4.54164 4.95698 5.06172 5.15687 5.20628 5.27948 5.30625 5.37965 5.65018 5.80080 5.87300 5.95389 6.04358 6.16596 6.61623 6.79882 7.19282 7.76844 7.78950 7.93721 8.03106 8.48275 8.80836 9.43866 10.93592 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.008229 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.487157 B = 3401.792615 C = 3563.492200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.235 3.765 10 N -0.582 5.582 11 C 0.567 3.433 12 O -0.478 6.478 13 C -0.166 4.166 14 H 0.095 0.905 15 C -0.082 4.082 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.142 4.142 19 H 0.129 0.871 20 C 0.537 3.463 21 O -0.470 6.470 22 H 0.266 0.734 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -13.117 0.246 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.077 0.923 9 C 0.118 3.882 10 N -0.326 5.326 11 C 0.356 3.644 12 O -0.350 6.350 13 C -0.187 4.187 14 H 0.113 0.887 15 C -0.120 4.120 16 C -0.159 4.159 17 C -0.143 4.143 18 C -0.163 4.163 19 H 0.147 0.853 20 C 0.325 3.675 21 O -0.340 6.340 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.581 -12.585 0.276 15.234 hybrid contribution 0.339 1.182 0.043 1.231 sum 8.920 -11.402 0.319 14.480 Atomic orbital electron populations 1.69920 1.06043 1.27430 1.49531 1.24923 0.94961 0.99420 0.94536 0.86406 0.79773 0.82526 0.78246 1.20375 1.20847 1.19751 1.21284 0.93356 0.90312 1.52470 0.92286 1.19581 0.87243 0.81852 0.99562 1.48682 1.43208 1.34353 1.06397 1.18800 0.82387 0.78942 0.84249 1.90688 1.63434 1.61552 1.19303 1.21295 0.98776 1.00722 0.97904 0.88691 1.20744 0.98097 0.95486 0.97714 1.23030 1.00163 0.99817 0.92867 1.22313 0.93268 1.00803 0.97894 1.23716 0.99439 0.97149 0.96000 0.85278 1.20699 0.76636 0.86011 0.84157 1.90697 1.52930 1.69588 1.20834 0.92403 0.93092 0.93600 0.90443 0.90656 0.90811 0.90960 0.90246 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.54 -15.52 9.39 -34.44 -0.32 -15.84 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 6.30 5.56 -5.19 -0.03 6.28 16 10 N -0.58 -12.88 2.70 -117.65 -0.32 -13.20 16 11 C 0.57 11.33 7.79 -12.47 -0.10 11.23 16 12 O -0.48 -10.96 17.78 5.60 0.10 -10.86 16 13 C -0.17 -2.41 3.11 -94.36 -0.29 -2.70 16 14 H 0.10 1.42 6.78 -51.93 -0.35 1.07 16 15 C -0.08 -0.85 6.65 -27.65 -0.18 -1.04 16 16 C -0.12 -1.01 6.95 -23.26 -0.16 -1.17 16 17 C -0.10 -1.11 6.33 -24.68 -0.16 -1.27 16 18 C -0.14 -1.94 3.82 -88.87 -0.34 -2.28 16 19 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 20 C 0.54 10.60 7.41 -10.27 -0.08 10.52 16 21 O -0.47 -10.80 17.90 5.61 0.10 -10.70 16 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.05 1.44 7.96 -51.93 -0.41 1.03 16 24 H 0.05 1.29 8.11 -51.93 -0.42 0.87 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 LS Contribution 260.74 15.07 3.93 3.93 Total: -1.00 -33.01 260.74 -5.91 -38.92 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -3.68 Total: -4.78 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -1.76 Total: 5.50 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.42 Total: -39.04 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.20 Total: -21.56 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.01 -5.91 -38.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163508922.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.421 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds