Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99497 * 2 1 4 4 H 1.48509 * 109.46855 * 269.99445 * 3 2 1 5 5 H 1.48498 * 109.47321 * 29.99533 * 3 2 1 6 6 H 1.48504 * 109.47104 * 149.99803 * 3 2 1 7 7 C 1.37877 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99929 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.37214 * 123.57680 * 269.99794 * 10 9 7 12 12 O 1.21226 * 127.70301 * 346.78128 * 11 10 9 13 13 C 1.44983 * 104.59497 * 166.75780 * 11 10 9 14 14 H 1.09003 * 104.22639 * 292.87893 * 13 11 10 15 15 C 1.47469 * 137.59106 * 160.98640 * 13 11 10 16 16 C 1.56255 * 103.63403 * 199.70418 * 15 13 11 17 17 C 1.56216 * 105.71728 * 5.74477 * 16 15 13 18 18 C 1.53637 * 101.97510 * 26.56171 * 17 16 15 19 19 H 1.09000 * 113.26887 * 75.00108 * 18 17 16 20 20 C 1.36587 * 123.57710 * 89.99485 * 10 9 7 21 21 O 1.21225 * 127.13355 * 343.73977 * 20 10 9 22 22 H 0.97001 * 120.00605 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 59.99298 * 9 7 2 24 24 H 1.09001 * 109.46815 * 299.99692 * 9 7 2 25 25 H 1.09002 * 110.59361 * 81.17002 * 15 13 11 26 26 H 1.08996 * 110.59450 * 318.23702 * 15 13 11 27 27 H 1.09002 * 110.21421 * 124.83227 * 16 15 13 28 28 H 1.08999 * 110.21390 * 246.66243 * 16 15 13 29 29 H 1.09004 * 110.91108 * 144.77951 * 17 16 15 30 30 H 1.08996 * 110.91415 * 268.38897 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6963 -4.1894 -1.1427 12 8 2.2905 -4.0524 -2.2767 13 6 3.8113 -4.9990 -0.6917 14 1 4.5465 -4.2728 -0.3448 15 6 4.6101 -6.1307 -1.1977 16 6 5.2655 -6.7240 0.0907 17 6 4.6431 -5.9325 1.2851 18 6 3.2852 -5.5023 0.7093 19 1 2.5622 -6.3162 0.6572 20 6 2.6941 -4.1867 1.1385 21 8 2.6606 -3.7309 2.2613 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 5.3753 -5.7804 -1.8905 26 1 3.9676 -6.8698 -1.6761 27 1 5.0304 -7.7848 0.1785 28 1 6.3455 -6.5790 0.0649 29 1 4.5118 -6.5782 2.1534 30 1 5.2524 -5.0644 1.5362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163508922.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = -70.064283 kcal Electronic energy + Delta-G solvation = -15454.804931 eV Core-core repulsion = 12828.987371 eV Total energy + Delta-G solvation = -2625.817560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.24515 -39.51553 -38.54723 -36.74931 -35.00085 -31.61147 -30.11983 -28.42468 -25.59487 -25.10228 -21.99806 -21.63297 -19.88993 -19.12527 -18.65731 -17.73303 -16.70319 -16.54082 -16.39503 -15.99106 -15.35764 -14.59666 -14.50892 -14.18303 -13.89537 -13.69633 -13.50439 -13.15505 -12.75447 -12.43799 -12.17516 -12.03475 -11.99080 -11.86502 -11.32252 -11.10048 -10.98639 -10.75883 -10.41864 -8.38427 -6.54616 0.51550 1.31046 1.34303 1.44216 1.53635 1.73953 2.30122 2.54348 2.93665 3.18155 3.43174 3.91081 3.98486 4.25921 4.33014 4.40179 4.51913 4.65882 4.73277 4.75852 4.93740 4.98951 5.12623 5.19998 5.35035 5.47751 5.50956 5.79673 5.99670 6.35729 6.49319 6.83064 7.16958 8.71296 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.008229 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.487157 B = 3401.792615 C = 3563.492200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.053 0.947 9 C 0.247 3.753 10 N -0.599 5.599 11 C 0.560 3.440 12 O -0.516 6.516 13 C -0.154 4.154 14 H 0.092 0.908 15 C -0.081 4.081 16 C -0.104 4.104 17 C -0.103 4.103 18 C -0.122 4.122 19 H 0.160 0.840 20 C 0.528 3.472 21 O -0.511 6.511 22 H 0.273 0.727 23 H 0.024 0.976 24 H 0.020 0.980 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.360 -14.631 0.307 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.598 4.598 8 H 0.071 0.929 9 C 0.127 3.873 10 N -0.344 5.344 11 C 0.353 3.647 12 O -0.391 6.391 13 C -0.175 4.175 14 H 0.110 0.890 15 C -0.119 4.119 16 C -0.141 4.141 17 C -0.141 4.141 18 C -0.142 4.142 19 H 0.178 0.822 20 C 0.320 3.680 21 O -0.384 6.384 22 H 0.082 0.918 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.945 -14.141 0.337 17.885 hybrid contribution -0.465 1.660 0.026 1.724 sum 10.480 -12.481 0.363 16.302 Atomic orbital electron populations 1.70029 1.07607 1.28801 1.49685 1.25922 0.95974 1.03363 0.93626 0.85309 0.78462 0.77626 0.78833 1.19219 1.19549 1.19205 1.21553 0.93244 0.91703 1.53301 0.92854 1.19013 0.87855 0.83499 0.96887 1.48867 1.43093 1.33738 1.08673 1.19696 0.83120 0.78847 0.83051 1.90654 1.64804 1.62971 1.20626 1.21279 0.96424 1.01717 0.98079 0.88965 1.20940 0.97850 0.93836 0.99269 1.22990 1.00801 1.00606 0.89735 1.22439 0.90664 1.01181 0.99841 1.23869 1.01448 0.94081 0.94847 0.82229 1.21850 0.75562 0.87795 0.82816 1.90659 1.54547 1.71010 1.22204 0.91841 0.95828 0.96226 0.89355 0.89333 0.87997 0.89037 0.88030 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.64 13.29 21.45 0.28 -56.35 16 2 C 0.01 0.67 5.46 84.65 0.46 1.13 16 3 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.56 -33.73 9.39 25.60 0.24 -33.49 16 8 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.25 14.09 5.56 85.63 0.48 14.56 16 10 N -0.60 -27.54 2.70 -760.49 -2.06 -29.60 16 11 C 0.56 22.75 7.79 85.58 0.67 23.41 16 12 O -0.52 -24.40 17.78 -2.86 -0.05 -24.45 16 13 C -0.15 -4.19 3.11 -13.22 -0.04 -4.24 16 14 H 0.09 2.63 6.78 -2.39 -0.02 2.61 16 15 C -0.08 -1.35 6.65 30.00 0.20 -1.15 16 16 C -0.10 -1.16 6.95 32.84 0.23 -0.93 16 17 C -0.10 -1.78 6.33 31.93 0.20 -1.58 16 18 C -0.12 -3.05 3.82 -9.66 -0.04 -3.09 16 19 H 0.16 3.12 8.14 -2.39 -0.02 3.10 16 20 C 0.53 21.11 7.41 87.30 0.65 21.76 16 21 O -0.51 -24.14 17.90 -2.86 -0.05 -24.19 16 22 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 23 H 0.02 1.44 7.96 -2.39 -0.02 1.42 16 24 H 0.02 1.19 8.11 -2.39 -0.02 1.17 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.33 7.93 -2.39 -0.02 1.31 16 Total: -1.00 -76.12 260.74 4.33 -71.78 By element: Atomic # 1 Polarization: -2.45 SS G_CDS: 1.14 Total: -1.31 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 3.04 Total: 16.40 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.77 Total: -85.95 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -0.10 Total: -48.64 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -76.12 4.33 -71.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163508922.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.720 kcal (2) G-P(sol) polarization free energy of solvation -76.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds