Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99802 * 2 1 4 4 H 1.48503 * 109.47453 * 270.00387 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00175 * 3 2 1 6 6 H 1.48497 * 109.47601 * 150.00401 * 3 2 1 7 7 C 1.37872 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00556 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99755 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.33830 * 122.75041 * 89.99955 * 10 9 7 12 12 O 1.21231 * 125.33754 * 0.04453 * 11 10 9 13 13 C 1.51254 * 109.32383 * 180.02562 * 11 10 9 14 14 H 1.09001 * 112.11241 * 237.83532 * 13 11 10 15 15 C 1.54159 * 109.25537 * 113.00680 * 13 11 10 16 16 C 1.54846 * 104.32295 * 224.11304 * 15 13 11 17 17 C 1.54849 * 102.73092 * 38.18074 * 16 15 13 18 18 C 1.54166 * 104.43561 * 321.75661 * 17 16 15 19 19 H 1.09003 * 112.04833 * 260.81951 * 18 17 16 20 20 C 1.33842 * 122.74825 * 270.00448 * 10 9 7 21 21 O 1.21226 * 125.33687 * 0.03202 * 20 10 9 22 22 H 0.96996 * 119.99981 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47312 * 60.00434 * 9 7 2 24 24 H 1.09000 * 109.47563 * 300.00017 * 9 7 2 25 25 H 1.09011 * 110.46356 * 105.40706 * 15 13 11 26 26 H 1.09000 * 110.57613 * 342.88119 * 15 13 11 27 27 H 1.08994 * 110.76040 * 279.86970 * 16 15 13 28 28 H 1.08998 * 110.91681 * 156.56340 * 16 15 13 29 29 H 1.09002 * 110.46461 * 80.53271 * 17 16 15 30 30 H 1.08997 * 110.45910 * 202.98671 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 6 4.2409 -3.2569 -1.1283 12 8 4.0903 -2.8294 -2.2527 13 6 4.7309 -4.6444 -0.7782 14 1 5.7114 -4.8534 -1.2062 15 6 3.6764 -5.6810 -1.2141 16 6 3.5824 -6.6584 -0.0167 17 6 3.7085 -5.7149 1.2047 18 6 4.7524 -4.6656 0.7736 19 1 5.7434 -4.8875 1.1699 20 6 4.2417 -3.2585 1.1229 21 8 4.0907 -2.8329 2.2479 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 4.0065 -6.2068 -2.1101 26 1 2.7146 -5.1988 -1.3888 27 1 4.4033 -7.3751 -0.0377 28 1 2.6219 -7.1735 -0.0095 29 1 2.7524 -5.2364 1.4169 30 1 4.0599 -6.2659 2.0770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163508988.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = -73.104387 kcal Electronic energy + Delta-G solvation = -15613.893238 eV Core-core repulsion = 12987.943850 eV Total energy + Delta-G solvation = -2625.949388 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.54503 -37.91672 -36.99144 -35.00792 -32.77043 -30.27362 -29.09412 -27.43861 -23.76114 -22.82199 -20.83092 -20.50441 -18.92634 -17.21074 -16.72785 -15.80966 -15.78342 -14.93868 -14.65936 -14.13234 -14.11508 -13.49339 -13.35734 -12.54178 -12.21100 -11.94733 -11.79732 -11.57148 -11.18374 -11.15787 -11.03751 -10.77909 -10.68994 -10.36340 -9.81032 -9.59141 -9.34500 -8.68924 -8.66686 -6.17462 -4.19002 2.07192 3.19511 3.25975 3.31848 3.32642 3.40529 4.06202 4.32446 4.43951 4.58605 4.69199 5.14753 5.15945 5.22133 5.27556 5.45215 5.46968 5.57621 5.84098 5.97352 5.99443 6.11580 6.28085 6.34288 6.54564 6.66864 7.41682 7.66441 7.97411 8.26075 8.50895 8.81116 9.39536 10.95419 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.037044 B = 0.009198 C = 0.008862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.670199 B = 3043.471081 C = 3158.635791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.201 3.799 10 N -0.550 5.550 11 C 0.529 3.471 12 O -0.483 6.483 13 C -0.131 4.131 14 H 0.122 0.878 15 C -0.109 4.109 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.122 4.122 19 H 0.124 0.876 20 C 0.526 3.474 21 O -0.483 6.483 22 H 0.267 0.733 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.342 -11.994 0.007 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.094 0.906 9 C 0.082 3.918 10 N -0.290 5.290 11 C 0.317 3.683 12 O -0.355 6.355 13 C -0.152 4.152 14 H 0.140 0.860 15 C -0.147 4.147 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.143 4.143 19 H 0.142 0.858 20 C 0.313 3.687 21 O -0.355 6.355 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.983 -11.334 0.007 15.104 hybrid contribution 0.242 1.066 -0.025 1.094 sum 10.225 -10.267 -0.018 14.491 Atomic orbital electron populations 1.69876 1.06160 1.27290 1.49455 1.24796 0.94840 0.98982 0.93959 0.86845 0.80454 0.83592 0.78912 1.19688 1.20607 1.18855 1.21082 0.88200 0.95294 1.52868 0.90603 1.20013 0.96987 0.76051 0.98752 1.46652 1.57255 1.17123 1.07962 1.20509 0.76114 0.87265 0.84390 1.90712 1.49499 1.73745 1.21575 1.22836 1.02301 0.94314 0.95793 0.86037 1.22227 0.98491 0.95296 0.98638 1.22527 1.02355 0.97231 0.93625 1.22232 0.98650 0.95374 0.98502 1.23230 1.02150 0.93882 0.95082 0.85784 1.21121 0.76082 0.87157 0.84304 1.90702 1.49565 1.73595 1.21590 0.92273 0.93381 0.93802 0.90222 0.90451 0.90888 0.90659 0.90463 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.96 55.43 0.77 -26.81 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.04 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.54 -15.79 9.94 -34.44 -0.34 -16.13 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 9 C 0.20 5.10 4.37 -5.20 -0.02 5.07 16 10 N -0.55 -11.92 2.53 -115.68 -0.29 -12.22 16 11 C 0.53 10.31 7.09 -11.14 -0.08 10.23 16 12 O -0.48 -10.94 17.47 5.60 0.10 -10.84 16 13 C -0.13 -1.75 3.91 -89.72 -0.35 -2.10 16 14 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.11 -1.31 6.36 -25.15 -0.16 -1.47 16 16 C -0.12 -1.17 6.90 -24.78 -0.17 -1.34 16 17 C -0.11 -1.31 6.39 -25.15 -0.16 -1.47 16 18 C -0.12 -1.61 4.13 -88.46 -0.37 -1.98 16 19 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 20 C 0.53 10.26 7.20 -9.88 -0.07 10.19 16 21 O -0.48 -10.96 17.47 5.60 0.10 -10.86 16 22 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.05 1.23 6.88 -51.93 -0.36 0.87 16 24 H 0.04 1.11 7.25 -51.93 -0.38 0.73 16 25 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.08 1.14 7.75 -51.93 -0.40 0.74 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.13 7.74 -51.93 -0.40 0.73 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 256.26 15.07 3.86 3.86 Total: -1.00 -34.33 256.26 -5.62 -39.95 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -3.66 Total: -3.32 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.82 Total: 3.21 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.48 Total: -39.02 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.20 Total: -21.71 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.33 -5.62 -39.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163508988.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.157 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds