Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99802 * 2 1 4 4 H 1.48503 * 109.47453 * 270.00387 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00175 * 3 2 1 6 6 H 1.48497 * 109.47601 * 150.00401 * 3 2 1 7 7 C 1.37872 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00556 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99755 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.33830 * 122.75041 * 89.99955 * 10 9 7 12 12 O 1.21231 * 125.33754 * 0.04453 * 11 10 9 13 13 C 1.51254 * 109.32383 * 180.02562 * 11 10 9 14 14 H 1.09001 * 112.11241 * 237.83532 * 13 11 10 15 15 C 1.54159 * 109.25537 * 113.00680 * 13 11 10 16 16 C 1.54846 * 104.32295 * 224.11304 * 15 13 11 17 17 C 1.54849 * 102.73092 * 38.18074 * 16 15 13 18 18 C 1.54166 * 104.43561 * 321.75661 * 17 16 15 19 19 H 1.09003 * 112.04833 * 260.81951 * 18 17 16 20 20 C 1.33842 * 122.74825 * 270.00448 * 10 9 7 21 21 O 1.21226 * 125.33687 * 0.03202 * 20 10 9 22 22 H 0.96996 * 119.99981 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47312 * 60.00434 * 9 7 2 24 24 H 1.09000 * 109.47563 * 300.00017 * 9 7 2 25 25 H 1.09011 * 110.46356 * 105.40706 * 15 13 11 26 26 H 1.09000 * 110.57613 * 342.88119 * 15 13 11 27 27 H 1.08994 * 110.76040 * 279.86970 * 16 15 13 28 28 H 1.08998 * 110.91681 * 156.56340 * 16 15 13 29 29 H 1.09002 * 110.46461 * 80.53271 * 17 16 15 30 30 H 1.08997 * 110.45910 * 202.98671 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 6 4.2409 -3.2569 -1.1283 12 8 4.0903 -2.8294 -2.2527 13 6 4.7309 -4.6444 -0.7782 14 1 5.7114 -4.8534 -1.2062 15 6 3.6764 -5.6810 -1.2141 16 6 3.5824 -6.6584 -0.0167 17 6 3.7085 -5.7149 1.2047 18 6 4.7524 -4.6656 0.7736 19 1 5.7434 -4.8875 1.1699 20 6 4.2417 -3.2585 1.1229 21 8 4.0907 -2.8329 2.2479 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 4.0065 -6.2068 -2.1101 26 1 2.7146 -5.1988 -1.3888 27 1 4.4033 -7.3751 -0.0377 28 1 2.6219 -7.1735 -0.0095 29 1 2.7524 -5.2364 1.4169 30 1 4.0599 -6.2659 2.0770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163508988.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = -98.202412 kcal Electronic energy + Delta-G solvation = -15614.981570 eV Core-core repulsion = 12987.943850 eV Total energy + Delta-G solvation = -2627.037720 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.00358 -39.55004 -38.20655 -36.74099 -34.94178 -31.89873 -30.15681 -29.08336 -25.21426 -24.83256 -21.78229 -21.75801 -20.51521 -19.39140 -18.28143 -17.29799 -17.27408 -16.57869 -16.07750 -15.70153 -15.49688 -14.90227 -14.86476 -14.66657 -14.02782 -13.47577 -13.37347 -12.87634 -12.64873 -12.35890 -12.30228 -12.15878 -11.94510 -11.91367 -11.63105 -11.18032 -10.97437 -10.87104 -10.57478 -8.47852 -6.57120 0.54667 1.25350 1.28520 1.38364 1.67736 1.90652 2.20519 2.83175 2.95361 3.17745 3.44083 3.65993 4.23636 4.25382 4.30641 4.43825 4.45139 4.50807 4.59647 4.65031 4.72901 5.01930 5.08923 5.15070 5.20390 5.22234 5.43531 5.97014 6.04084 6.41467 6.45851 6.84162 7.07818 8.68955 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.037044 B = 0.009198 C = 0.008862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.670199 B = 3043.471081 C = 3158.635791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.552 4.552 8 H 0.027 0.973 9 C 0.207 3.793 10 N -0.569 5.569 11 C 0.517 3.483 12 O -0.525 6.525 13 C -0.112 4.112 14 H 0.172 0.828 15 C -0.113 4.113 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.099 4.099 19 H 0.176 0.824 20 C 0.512 3.488 21 O -0.526 6.526 22 H 0.274 0.726 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.187 -13.626 0.001 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.171 1.171 7 C -0.590 4.590 8 H 0.045 0.955 9 C 0.086 3.914 10 N -0.309 5.309 11 C 0.309 3.691 12 O -0.400 6.400 13 C -0.133 4.133 14 H 0.190 0.810 15 C -0.151 4.151 16 C -0.141 4.141 17 C -0.152 4.152 18 C -0.120 4.120 19 H 0.194 0.806 20 C 0.303 3.697 21 O -0.400 6.400 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.128 0.872 26 H 0.053 0.947 27 H 0.134 0.866 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.840 -13.016 0.001 18.283 hybrid contribution -0.752 1.519 -0.025 1.695 sum 12.087 -11.497 -0.024 16.682 Atomic orbital electron populations 1.70021 1.08125 1.28862 1.50402 1.25864 0.95866 1.03473 0.93056 0.85688 0.79543 0.77887 0.79812 1.18344 1.19304 1.17133 1.21267 0.90568 0.93757 1.53375 0.95466 1.19624 0.94155 0.79242 0.98392 1.46926 1.57673 1.16235 1.10071 1.21730 0.74875 0.89386 0.83134 1.90673 1.51285 1.75130 1.22941 1.23057 1.04633 0.89643 0.95966 0.81035 1.22316 0.96077 0.95422 1.01276 1.22534 1.04445 0.96638 0.90519 1.22331 0.96341 0.95455 1.01075 1.23472 1.04579 0.89027 0.94915 0.80639 1.22417 0.74866 0.89405 0.83045 1.90662 1.51342 1.75050 1.22983 0.91716 0.93618 0.93709 0.87226 0.94733 0.86581 0.90246 0.94667 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.29 13.96 21.45 0.30 -59.99 16 2 C 0.02 1.04 5.47 84.65 0.46 1.50 16 3 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 7 C -0.55 -34.31 9.94 25.60 0.25 -34.06 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 9 C 0.21 10.85 4.37 85.63 0.37 11.23 16 10 N -0.57 -25.24 2.53 -757.77 -1.92 -27.17 16 11 C 0.52 20.14 7.09 87.98 0.62 20.77 16 12 O -0.53 -24.28 17.47 -2.88 -0.05 -24.33 16 13 C -0.11 -2.63 3.91 -10.21 -0.04 -2.67 16 14 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.11 -2.42 6.36 31.62 0.20 -2.22 16 16 C -0.10 -1.59 6.90 31.86 0.22 -1.37 16 17 C -0.11 -2.40 6.39 31.62 0.20 -2.19 16 18 C -0.10 -2.29 4.13 -9.40 -0.04 -2.33 16 19 H 0.18 2.38 8.14 -2.39 -0.02 2.36 16 20 C 0.51 19.97 7.20 88.79 0.64 20.61 16 21 O -0.53 -24.39 17.47 -2.86 -0.05 -24.44 16 22 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 23 H 0.05 2.39 6.88 -2.39 -0.02 2.37 16 24 H 0.04 2.31 7.25 -2.39 -0.02 2.30 16 25 H 0.11 1.72 8.14 -2.38 -0.02 1.71 16 26 H 0.03 1.03 7.75 -2.39 -0.02 1.01 16 27 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 29 H 0.03 1.03 7.74 -2.39 -0.02 1.01 16 30 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -82.37 256.26 4.15 -78.22 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: 1.08 Total: 1.07 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 2.90 Total: 9.27 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.62 Total: -87.16 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -0.10 Total: -48.77 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -82.37 4.15 -78.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163508988.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.982 kcal (2) G-P(sol) polarization free energy of solvation -82.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds