Wall clock time and date at job start Mon Mar 30 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.56480 * 110.21314 * 2 1 4 4 C 1.51375 * 101.71580 * 144.45084 * 3 2 1 5 5 H 1.09003 * 110.90820 * 70.30320 * 4 3 2 6 6 C 1.48135 * 124.90629 * 207.94975 * 4 3 2 7 7 O 1.21218 * 127.92878 * 322.71978 * 6 4 3 8 8 N 1.36970 * 104.73812 * 143.59800 * 6 4 3 9 9 C 1.37490 * 123.65048 * 163.76109 * 8 6 4 10 10 H 1.08002 * 120.00052 * 150.51494 * 9 8 6 11 11 C 1.38914 * 120.00637 * 330.51121 * 9 8 6 12 12 N 1.31360 * 119.99730 * 342.88091 * 11 9 8 13 13 Si 1.86802 * 120.00496 * 162.88071 * 11 9 8 14 14 H 1.48499 * 109.46772 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47468 * 119.99848 * 13 11 9 16 16 H 1.48505 * 109.47190 * 240.00282 * 13 11 9 17 17 C 1.37173 * 112.69140 * 343.78221 * 8 6 4 18 18 O 1.21215 * 127.54750 * 165.63480 * 17 8 6 19 19 C 1.46402 * 104.89902 * 345.66541 * 17 8 6 20 20 H 1.08993 * 107.39172 * 286.94703 * 19 17 8 21 21 C 1.48828 * 132.25816 * 151.81192 * 19 17 8 22 22 H 1.09001 * 109.47285 * 302.54673 * 1 2 3 23 23 H 1.09002 * 109.47348 * 62.55026 * 1 2 3 24 24 H 1.08998 * 109.46828 * 182.55273 * 1 2 3 25 25 H 1.09005 * 110.18919 * 238.15602 * 2 1 3 26 26 H 1.08999 * 110.96176 * 262.60701 * 3 2 1 27 27 H 1.08994 * 110.95801 * 26.34833 * 3 2 1 28 28 H 0.97003 * 119.99954 * 179.97438 * 12 11 9 29 29 H 1.09000 * 110.52837 * 91.57452 * 21 19 17 30 30 H 1.09003 * 110.65037 * 328.87023 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0706 1.4684 0.0000 4 6 3.3085 1.3402 0.8618 5 1 4.0868 0.7797 0.3437 6 6 3.8877 2.4301 1.6809 7 8 3.9569 3.6096 1.4101 8 7 4.3498 1.8089 2.8108 9 6 5.2375 2.3855 3.6883 10 1 5.2148 2.1165 4.7341 11 6 6.1636 3.3139 3.2300 12 7 6.4279 3.3990 1.9461 13 14 7.0332 4.4412 4.4393 14 1 6.5615 4.1478 5.8165 15 1 8.4989 4.2170 4.3592 16 1 6.7297 5.8557 4.1036 17 6 3.8314 0.5492 2.9717 18 8 4.2219 -0.3202 3.7208 19 6 2.7038 0.4843 2.0402 20 1 1.9024 1.0950 2.4558 21 6 2.0697 -0.6493 1.3138 22 1 -0.3634 0.5529 0.8663 23 1 -0.3634 0.4737 -0.9120 24 1 -0.3633 -1.0266 0.0458 25 1 1.9062 -0.5398 -0.8691 26 1 2.3283 1.7891 -1.0094 27 1 1.3494 2.1494 0.4517 28 1 7.0744 4.0476 1.6259 29 1 1.2501 -1.0672 1.8984 30 1 2.8064 -1.4195 1.0850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164341460.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:10 Heat of formation + Delta-G solvation = -50.921598 kcal Electronic energy + Delta-G solvation = -15763.069745 eV Core-core repulsion = 13138.082274 eV Total energy + Delta-G solvation = -2624.987470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.23886 -37.24949 -36.96167 -34.35012 -32.69801 -30.51735 -28.78932 -26.62012 -23.83032 -23.54883 -20.22504 -19.95091 -18.41766 -17.05763 -16.94349 -15.33136 -14.66885 -14.61803 -14.36736 -13.99800 -13.47746 -13.25969 -13.14729 -12.32079 -12.09643 -11.87051 -11.74688 -11.41811 -11.08520 -10.88458 -10.69340 -10.56349 -10.48762 -10.28382 -10.16107 -9.51531 -8.89829 -8.70433 -7.94201 -6.47178 -4.17275 2.81428 3.17064 3.25093 3.30148 3.81174 3.98558 4.28751 4.51834 4.80707 4.90102 5.11126 5.22319 5.38284 5.57353 5.62608 5.69917 5.79598 5.86067 5.93453 6.04850 6.08810 6.22595 6.23113 6.34805 6.45596 6.56817 7.37841 7.79271 8.05460 8.69558 8.82995 9.13032 9.73176 10.63067 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.047192 B = 0.009345 C = 0.008230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.176007 B = 2995.609859 C = 3401.474439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.092 4.092 4 C -0.142 4.142 5 H 0.108 0.892 6 C 0.531 3.469 7 O -0.468 6.468 8 N -0.430 5.430 9 C -0.355 4.355 10 H 0.099 0.901 11 C 0.054 3.946 12 N -0.836 5.836 13 Si 0.930 3.070 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.277 1.277 17 C 0.516 3.484 18 O -0.516 6.516 19 C -0.153 4.153 20 H 0.092 0.908 21 C -0.084 4.084 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.274 0.726 29 H 0.072 0.928 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -4.533 -4.646 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.130 4.130 4 C -0.164 4.164 5 H 0.126 0.874 6 C 0.321 3.679 7 O -0.339 6.339 8 N -0.163 5.163 9 C -0.481 4.481 10 H 0.117 0.883 11 C -0.156 4.156 12 N -0.470 5.470 13 Si 0.755 3.245 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.202 1.202 17 C 0.307 3.693 18 O -0.394 6.394 19 C -0.174 4.174 20 H 0.110 0.890 21 C -0.122 4.122 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.498 -4.189 -4.525 10.500 hybrid contribution 0.645 0.610 0.477 1.008 sum -7.853 -3.579 -4.048 9.532 Atomic orbital electron populations 1.21840 0.94874 1.01529 1.01811 1.22696 0.95606 0.95513 0.97617 1.21862 0.95221 0.96093 0.99808 1.22592 0.99153 0.98172 0.96433 0.87405 1.19583 0.77805 0.87656 0.82836 1.90522 1.52721 1.16510 1.74136 1.44058 1.37229 1.11731 1.23258 1.19535 1.12866 1.24637 0.91030 0.88292 1.25355 0.95605 0.98151 0.96492 1.69815 1.30599 1.32646 1.13917 0.85845 0.78491 0.79806 0.80321 1.18997 1.20496 1.20222 1.19504 0.84675 0.81542 0.83535 1.90552 1.66716 1.40959 1.41132 1.21579 0.98419 1.00547 0.96883 0.89006 1.21132 0.99732 0.96352 0.94976 0.92515 0.92654 0.92668 0.90418 0.90820 0.90818 0.91567 0.90912 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.99 37.16 0.33 -1.08 16 2 C -0.10 -1.15 3.58 -87.05 -0.31 -1.46 16 3 C -0.09 -1.34 6.10 -25.68 -0.16 -1.50 16 4 C -0.14 -2.72 3.07 -91.23 -0.28 -3.00 16 5 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 6 C 0.53 13.34 6.65 -11.19 -0.07 13.26 16 7 O -0.47 -13.15 15.88 5.61 0.09 -13.06 16 8 N -0.43 -11.43 2.84 -61.82 -0.18 -11.61 16 9 C -0.35 -10.14 9.70 -14.76 -0.14 -10.28 16 10 H 0.10 2.79 7.89 -52.49 -0.41 2.38 16 11 C 0.05 1.52 4.91 -17.50 -0.09 1.43 16 12 N -0.84 -24.25 11.13 55.49 0.62 -23.64 16 13 Si 0.93 21.42 29.58 -169.99 -5.03 16.39 16 14 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 C 0.52 12.35 7.76 -11.88 -0.09 12.26 16 18 O -0.52 -13.58 17.88 5.61 0.10 -13.48 16 19 C -0.15 -2.80 2.81 -93.24 -0.26 -3.06 16 20 H 0.09 1.61 7.81 -51.93 -0.41 1.21 16 21 C -0.08 -1.17 6.32 -27.07 -0.17 -1.34 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.07 0.90 7.76 -51.93 -0.40 0.50 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 255.19 15.07 3.85 3.85 Total: -1.00 -32.77 255.19 -5.52 -38.29 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -3.73 Total: -1.96 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.24 Total: 5.23 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.44 Total: -35.25 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: 0.19 Total: -26.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.77 -5.52 -38.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164341460.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.634 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds