Wall clock time and date at job start Mon Mar 30 2020 02:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99912 * 2 1 4 4 C 1.50697 * 109.46706 * 180.02562 * 3 2 1 5 5 C 1.38347 * 119.90770 * 269.72620 * 4 3 2 6 6 C 1.38042 * 120.08999 * 179.72763 * 5 4 3 7 7 C 1.39106 * 119.90575 * 0.57207 * 6 5 4 8 8 S 1.76203 * 120.08918 * 179.68259 * 7 6 5 9 9 C 1.76200 * 99.99964 * 265.50863 * 8 7 6 10 10 H 1.07994 * 120.00040 * 5.11558 * 9 8 7 11 11 C 1.38718 * 119.99819 * 185.11589 * 9 8 7 12 12 N 1.31629 * 120.00124 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99972 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47019 * 60.00259 * 13 11 9 15 15 H 1.48504 * 109.47069 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47228 * 300.00253 * 13 11 9 17 17 C 1.39105 * 119.82153 * 359.69984 * 7 6 5 18 18 C 1.38037 * 119.90689 * 0.02562 * 17 7 6 19 19 H 1.09001 * 109.47450 * 59.99715 * 1 2 3 20 20 H 1.08994 * 109.47364 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47098 * 299.99694 * 1 2 3 22 22 H 1.00901 * 110.99603 * 236.04922 * 2 1 3 23 23 H 1.09001 * 109.47091 * 299.99738 * 3 2 1 24 24 H 1.09002 * 109.47029 * 60.00061 * 3 2 1 25 25 H 1.07995 * 119.95228 * 0.02562 * 5 4 3 26 26 H 1.07995 * 120.04506 * 180.27135 * 6 5 4 27 27 H 0.97003 * 119.99831 * 180.02562 * 12 11 9 28 28 H 1.08002 * 120.04883 * 179.97438 * 17 7 6 29 29 H 1.07997 * 119.95731 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3311 -0.0006 5 6 4.1921 1.3182 1.1983 6 6 5.5718 1.2757 1.2021 7 6 6.2685 1.2578 -0.0018 8 16 8.0300 1.2119 -0.0025 9 6 8.3808 2.9333 -0.1381 10 1 7.5756 3.6524 -0.1088 11 6 9.6912 3.3647 -0.2826 12 7 10.6725 2.4882 -0.3188 13 14 10.0631 5.1897 -0.4271 14 1 9.5874 5.8899 0.7928 15 1 11.5280 5.3863 -0.5718 16 1 9.3698 5.7434 -1.6178 17 6 5.5709 1.2766 -1.2051 18 6 4.1910 1.3134 -1.2001 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8306 -0.5261 -0.7814 23 1 1.6460 1.8948 -0.8900 24 1 1.6459 1.8948 0.8900 25 1 3.6505 1.3366 2.1325 26 1 6.1098 1.2612 2.1385 27 1 11.5889 2.7900 -0.4195 28 1 6.1081 1.2632 -2.1419 29 1 3.6486 1.3284 -2.1339 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168281152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:00 Heat of formation + Delta-G solvation = 15.233999 kcal Electronic energy + Delta-G solvation = -12261.402382 eV Core-core repulsion = 10082.036505 eV Total energy + Delta-G solvation = -2179.365877 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.75749 -35.84666 -32.48043 -31.09315 -30.42417 -26.57677 -25.49540 -23.58921 -22.10468 -20.88392 -17.87917 -16.60357 -15.87722 -15.06729 -14.83056 -14.68268 -14.29334 -13.76970 -13.36604 -12.90053 -12.59664 -12.27920 -12.11382 -11.81405 -11.24080 -11.09135 -11.06999 -10.65525 -10.54834 -9.84882 -9.12574 -8.85609 -8.58972 -8.38265 -7.81675 -6.65821 -6.25493 -3.98615 1.68625 1.97035 3.21550 3.22766 3.27021 3.54437 4.02268 4.23256 4.49543 4.96325 5.07896 5.10304 5.23983 5.31867 5.46949 5.52652 5.54504 5.64084 5.68082 6.04430 6.14353 6.33903 6.56480 6.75081 6.87305 6.99671 7.15743 7.24195 7.47844 7.59777 8.35506 9.19663 10.81026 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.056825 B = 0.005766 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.624270 B = 4854.472879 C = 5033.450684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.103 3.897 4 C -0.094 4.094 5 C -0.110 4.110 6 C -0.085 4.085 7 C -0.093 4.093 8 S -0.046 6.046 9 C -0.517 4.517 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.872 5.872 13 Si 0.921 3.079 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.274 1.274 17 C -0.083 4.083 18 C -0.127 4.127 19 H 0.019 0.981 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.344 0.656 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.269 0.731 28 H 0.124 0.876 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.256 -2.165 -0.324 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.321 5.321 3 C -0.026 4.026 4 C -0.095 4.095 5 C -0.131 4.131 6 C -0.105 4.105 7 C -0.204 4.204 8 S 0.188 5.812 9 C -0.664 4.664 10 H 0.092 0.908 11 C -0.137 4.137 12 N -0.507 5.507 13 Si 0.747 3.253 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.104 4.104 18 C -0.148 4.148 19 H 0.038 0.962 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.161 0.839 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.134 0.866 26 H 0.143 0.857 27 H 0.079 0.921 28 H 0.142 0.858 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.237 -3.153 0.413 14.588 hybrid contribution -0.817 2.426 -1.147 2.805 sum -15.055 -0.727 -0.734 15.090 Atomic orbital electron populations 1.22204 0.88033 1.01767 1.00252 1.60440 1.07206 1.14070 1.50383 1.20861 0.91378 0.89547 1.00796 1.19628 0.94050 1.02231 0.93581 1.20938 0.94092 1.01039 0.97009 1.21693 0.93460 0.97364 0.98029 1.22807 1.02894 1.00454 0.94280 1.83528 0.89453 1.12553 1.95621 1.22783 0.95335 0.90440 1.57852 0.90778 1.25002 0.95138 0.99056 0.94499 1.69991 0.99901 1.33954 1.46864 0.86184 0.77311 0.82875 0.78963 1.19844 1.20767 1.19906 1.21677 0.93310 0.97275 0.98144 1.20954 0.94474 1.02624 0.96733 0.96223 0.91466 0.91769 0.83865 0.94715 0.90473 0.86611 0.85671 0.92086 0.85753 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.07 0.64 0.88 15 2 N -0.69 -7.91 6.84 -122.42 -0.84 -8.74 15 3 C 0.10 1.26 5.81 -4.98 -0.03 1.23 15 4 C -0.09 -1.46 5.40 -104.54 -0.56 -2.02 15 5 C -0.11 -1.84 9.69 -39.61 -0.38 -2.23 15 6 C -0.08 -1.66 9.80 -39.33 -0.39 -2.05 15 7 C -0.09 -2.06 5.46 -38.94 -0.21 -2.28 15 8 S -0.05 -1.21 21.41 -107.50 -2.30 -3.51 15 9 C -0.52 -14.76 9.46 30.91 0.29 -14.47 15 10 H 0.07 2.10 7.79 -52.49 -0.41 1.69 15 11 C 0.07 2.03 5.49 -17.46 -0.10 1.93 15 12 N -0.87 -25.69 13.22 55.49 0.73 -24.96 15 13 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 15 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 17 C -0.08 -1.64 9.80 -39.33 -0.39 -2.02 15 18 C -0.13 -2.08 9.69 -39.62 -0.38 -2.47 15 19 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 15 20 H 0.07 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.34 3.77 8.81 -39.29 -0.35 3.43 15 23 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 15 24 H 0.08 0.90 8.08 -51.93 -0.42 0.48 15 25 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.13 2.39 8.06 -52.49 -0.42 1.97 15 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 28 H 0.12 2.42 8.06 -52.49 -0.42 2.00 15 29 H 0.11 1.51 8.06 -52.49 -0.42 1.08 15 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -30.48 271.38 -8.53 -39.01 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.69 Total: 1.11 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -1.50 Total: -23.49 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.10 Total: -33.70 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.30 Total: -3.51 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.48 -8.53 -39.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168281152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.245 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds