Wall clock time and date at job start Mon Mar 30 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30997 * 1 3 3 Si 1.86805 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47169 * 240.00104 * 3 2 1 5 5 H 1.48505 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47137 * 119.99518 * 3 2 1 7 7 C 1.39936 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99690 * 180.02562 * 7 2 1 9 9 C 1.39596 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.39662 * 125.99698 * 179.97438 * 9 7 2 11 11 C 1.39297 * 106.70189 * 179.97438 * 10 9 7 12 12 C 1.38073 * 107.11445 * 0.02562 * 11 10 9 13 13 N 1.37767 * 125.61515 * 179.97438 * 12 11 10 14 14 C 1.47024 * 110.99084 * 56.32429 * 13 12 11 15 15 C 1.53103 * 109.24985 * 182.34961 * 14 13 12 16 16 O 1.43012 * 109.29295 * 303.21723 * 15 14 13 17 17 C 1.43011 * 113.74271 * 58.65008 * 16 15 14 18 18 C 1.47018 * 110.99829 * 179.97438 * 13 12 11 19 19 O 1.34442 * 108.76875 * 0.22729 * 12 11 10 20 20 H 0.97002 * 120.00046 * 0.02562 * 1 2 3 21 21 H 1.08005 * 126.64788 * 0.02562 * 10 9 7 22 22 H 1.07995 * 126.44677 * 179.97438 * 11 10 9 23 23 H 1.08998 * 109.47369 * 62.43686 * 14 13 12 24 24 H 1.08998 * 109.54483 * 302.29894 * 14 13 12 25 25 H 1.09002 * 109.50635 * 183.25881 * 15 14 13 26 26 H 1.09003 * 109.50698 * 63.17493 * 15 14 13 27 27 H 1.08997 * 109.50806 * 61.26171 * 17 16 15 28 28 H 1.08997 * 109.50924 * 181.35636 * 17 16 15 29 29 H 1.08994 * 109.50209 * 57.67585 * 18 13 12 30 30 H 1.09003 * 109.54070 * 297.56550 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 3.0977 1.6964 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0976 1.6965 1.2125 7 6 2.0097 -1.2119 0.0005 8 1 3.0897 -1.2118 0.0010 9 6 1.3117 -2.4208 0.0005 10 6 1.8799 -3.6966 0.0005 11 6 0.8239 -4.6051 0.0011 12 6 -0.3447 -3.8698 0.0009 13 7 -1.6202 -4.3905 0.0008 14 6 -1.8203 -5.2940 1.1432 15 6 -3.2270 -5.8940 1.0719 16 8 -4.1903 -4.8374 1.0410 17 6 -4.0249 -3.9395 -0.0598 18 6 -2.6267 -3.3188 0.0012 19 8 -0.0329 -2.5620 -0.0049 20 1 -0.4850 0.8401 -0.0004 21 1 2.9338 -3.9330 0.0009 22 1 0.9042 -5.6821 0.0009 23 1 -1.7096 -4.7350 2.0724 24 1 -1.0812 -6.0944 1.1089 25 1 -3.4008 -6.5194 1.9476 26 1 -3.3199 -6.4978 0.1692 27 1 -4.1405 -4.4859 -0.9958 28 1 -4.7761 -3.1517 -0.0030 29 1 -2.4754 -2.6772 -0.8669 30 1 -2.5297 -2.7279 0.9119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201494163.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:41 Heat of formation + Delta-G solvation = -57.002160 kcal Electronic energy + Delta-G solvation = -15430.033260 eV Core-core repulsion = 12804.782117 eV Total energy + Delta-G solvation = -2625.251143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.45754 -40.34082 -36.72692 -35.43544 -33.26742 -32.10801 -30.74153 -28.51124 -25.51911 -25.06873 -22.23623 -21.68324 -21.03454 -19.45441 -18.37348 -17.13638 -16.96399 -16.57950 -16.04565 -15.99706 -15.84915 -15.32996 -15.04189 -14.13960 -13.52420 -13.30327 -13.15430 -12.98909 -12.91742 -12.53317 -12.49335 -12.28350 -11.84812 -11.68291 -11.38845 -10.99969 -10.46508 -10.13600 -8.78134 -8.71688 -6.33486 1.14527 1.36162 1.51149 1.58053 2.07133 2.15913 2.49271 2.86350 3.18512 3.25304 3.84601 4.02014 4.10056 4.16466 4.27321 4.48754 4.57922 4.65502 4.77155 4.80774 4.92547 5.02952 5.08611 5.33090 5.43957 5.64411 5.84006 6.06379 6.11109 6.46134 6.66478 6.70471 7.22018 8.24710 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.042077 B = 0.008018 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.293924 B = 3491.103710 C = 4035.854450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.019 3.981 3 Si 1.005 2.995 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.476 4.476 8 H 0.112 0.888 9 C 0.165 3.835 10 C -0.400 4.400 11 C -0.172 4.172 12 C -0.001 4.001 13 N -0.426 5.426 14 C 0.013 3.987 15 C 0.070 3.930 16 O -0.399 6.399 17 C 0.076 3.924 18 C 0.024 3.976 19 O -0.190 6.190 20 H 0.291 0.709 21 H 0.125 0.875 22 H 0.142 0.858 23 H 0.024 0.976 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 -4.464 0.893 7.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.197 4.197 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.506 4.506 8 H 0.130 0.870 9 C 0.112 3.888 10 C -0.421 4.421 11 C -0.194 4.194 12 C -0.143 4.143 13 N -0.150 5.150 14 C -0.113 4.113 15 C -0.006 4.006 16 O -0.317 6.317 17 C -0.001 4.001 18 C -0.104 4.104 19 O -0.086 6.086 20 H 0.101 0.899 21 H 0.143 0.857 22 H 0.160 0.840 23 H 0.042 0.958 24 H 0.117 0.883 25 H 0.148 0.852 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.090 0.910 30 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.404 -4.396 0.612 7.792 hybrid contribution 0.960 1.014 0.457 1.470 sum -5.444 -3.382 1.070 6.497 Atomic orbital electron populations 1.69929 1.09222 1.31130 1.34471 1.27170 0.95881 1.05533 0.91072 0.84902 0.78326 0.73890 0.80516 1.17715 1.19100 1.17815 1.19071 0.95246 0.88460 1.47817 0.87013 1.20013 0.78439 0.95539 0.94770 1.21375 0.98404 0.91685 1.30628 1.20999 0.90276 0.98567 1.09607 1.20762 0.91399 0.82147 1.19991 1.59904 0.97896 1.17089 1.40075 1.23213 1.00824 0.96823 0.90426 1.22852 0.84232 0.88926 1.04596 1.87927 1.53548 1.41044 1.49225 1.22739 0.93628 0.93461 0.90235 1.22617 0.93576 0.93194 1.00974 1.84375 1.25085 1.24807 1.74335 0.89860 0.85717 0.84000 0.95801 0.88261 0.85242 0.90622 0.90672 0.86156 0.91025 0.96139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.96 11.99 21.84 0.26 -44.69 16 2 C 0.02 1.00 5.50 85.23 0.47 1.47 16 3 Si 1.01 38.14 29.56 68.60 2.03 40.17 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 5 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 7 C -0.48 -26.61 9.30 23.01 0.21 -26.40 16 8 H 0.11 5.76 7.85 -2.91 -0.02 5.74 16 9 C 0.17 9.75 6.78 22.94 0.16 9.91 16 10 C -0.40 -21.60 10.91 22.87 0.25 -21.35 16 11 C -0.17 -8.56 10.19 22.49 0.23 -8.33 16 12 C 0.00 -0.04 6.58 83.72 0.55 0.51 16 13 N -0.43 -18.03 4.78 -811.89 -3.88 -21.90 16 14 C 0.01 0.45 5.46 86.31 0.47 0.92 16 15 C 0.07 1.83 7.01 72.02 0.50 2.34 16 16 O -0.40 -12.00 10.83 -148.98 -1.61 -13.62 16 17 C 0.08 2.25 7.01 72.02 0.50 2.75 16 18 C 0.02 0.97 5.03 86.31 0.43 1.41 16 19 O -0.19 -11.21 8.08 -12.95 -0.10 -11.31 16 20 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 21 H 0.12 6.22 8.06 -2.91 -0.02 6.20 16 22 H 0.14 5.99 7.89 -2.91 -0.02 5.97 16 23 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.10 3.12 7.50 -2.39 -0.02 3.10 16 25 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.07 3.13 8.06 -2.39 -0.02 3.11 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -66.99 256.82 1.61 -65.38 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.13 Total: 22.76 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 3.78 Total: -36.78 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -3.62 Total: -66.60 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.72 Total: -24.93 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -66.99 1.61 -65.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201494163.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.380 kcal (2) G-P(sol) polarization free energy of solvation -66.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds