Wall clock time and date at job start Mon Mar 30 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48493 * 109.46967 * 269.99812 * 3 2 1 5 5 H 1.48499 * 109.47010 * 30.00145 * 3 2 1 6 6 H 1.48502 * 109.46769 * 149.99970 * 3 2 1 7 7 C 1.37877 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00096 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99665 * 180.02562 * 7 2 1 10 10 H 1.08997 * 112.75344 * 49.22357 * 9 7 2 11 11 C 1.53706 * 113.53255 * 278.39557 * 9 7 2 12 12 C 1.53517 * 83.51095 * 219.20572 * 11 9 7 13 13 N 1.47479 * 87.99753 * 26.02360 * 12 11 9 14 14 C 1.46893 * 111.00130 * 221.26429 * 13 12 11 15 15 C 1.53004 * 109.47371 * 268.47431 * 14 13 12 16 16 C 1.52993 * 109.47215 * 180.02562 * 15 14 13 17 17 F 1.39899 * 109.47455 * 59.99913 * 16 15 14 18 18 F 1.39897 * 109.47016 * 179.97438 * 16 15 14 19 19 F 1.39904 * 109.47395 * 299.99983 * 16 15 14 20 20 H 0.96997 * 120.00168 * 0.02562 * 1 2 3 21 21 H 1.08999 * 114.22234 * 105.58853 * 11 9 7 22 22 H 1.08992 * 114.16898 * 332.82638 * 11 9 7 23 23 H 1.09002 * 113.47888 * 271.22719 * 12 11 9 24 24 H 1.09003 * 113.47419 * 140.82052 * 12 11 9 25 25 H 1.08994 * 109.47380 * 28.47659 * 14 13 12 26 26 H 1.08998 * 109.46947 * 148.47439 * 14 13 12 27 27 H 1.09004 * 109.46578 * 300.00235 * 15 14 13 28 28 H 1.09000 * 109.46729 * 59.99406 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.9328 -0.5380 0.7618 11 6 4.1257 -0.9873 -1.3937 12 6 5.1400 -2.0336 -0.9106 13 7 4.0991 -2.5468 -0.0006 14 6 4.6649 -2.8755 1.3145 15 6 5.0946 -4.3439 1.3323 16 6 5.6835 -4.6864 2.7022 17 9 4.7183 -4.4710 3.6918 18 9 6.0758 -6.0291 2.7186 19 9 6.7942 -3.8725 2.9492 20 1 -0.4850 0.8400 -0.0004 21 1 4.5492 0.0043 -1.5532 22 1 3.4932 -1.3247 -2.2146 23 1 5.9958 -1.6016 -0.3918 24 1 5.4308 -2.7455 -1.6831 25 1 5.5304 -2.2414 1.5065 26 1 3.9133 -2.7076 2.0858 27 1 4.2291 -4.9780 1.1403 28 1 5.8463 -4.5118 0.5610 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213595404.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:32 Heat of formation + Delta-G solvation = -125.538195 kcal Electronic energy + Delta-G solvation = -15596.816327 eV Core-core repulsion = 12426.736498 eV Total energy + Delta-G solvation = -3170.079829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.00170 -47.52252 -47.45769 -39.25121 -33.49397 -32.31743 -28.21357 -27.24033 -24.04737 -22.53962 -21.53797 -18.95681 -18.43925 -18.26747 -17.18763 -16.92994 -15.18693 -15.01205 -14.68631 -14.36769 -14.13140 -13.90944 -13.64017 -13.63220 -13.30853 -13.01359 -12.39167 -12.06708 -11.88624 -11.69545 -11.14295 -10.70258 -10.62318 -10.39917 -10.04433 -9.66230 -9.23635 -8.59970 -8.07465 -6.11205 -4.10326 2.88330 3.24414 3.31265 3.32579 3.89978 4.14543 4.18778 4.36324 4.83920 5.09155 5.15217 5.22986 5.44735 5.59842 5.64455 5.93607 6.09710 6.12011 6.32007 6.44519 6.58411 6.95949 7.00675 7.62973 7.86061 8.53902 8.98345 9.50261 11.01609 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.041048 B = 0.007293 C = 0.006931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.957581 B = 3838.220299 C = 4038.760344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.139 3.861 10 H 0.039 0.961 11 C -0.156 4.156 12 C -0.012 4.012 13 N -0.459 5.459 14 C 0.018 3.982 15 C -0.155 4.155 16 C 0.451 3.549 17 F -0.182 7.182 18 F -0.190 7.190 19 F -0.188 7.188 20 H 0.265 0.735 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.330 -6.108 2.512 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.535 4.535 8 H 0.100 0.900 9 C 0.031 3.969 10 H 0.057 0.943 11 C -0.194 4.194 12 C -0.141 4.141 13 N -0.181 5.181 14 C -0.111 4.111 15 C -0.194 4.194 16 C 0.397 3.603 17 F -0.164 7.164 18 F -0.171 7.171 19 F -0.170 7.170 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.109 0.891 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.134 0.866 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.767 -6.596 2.405 13.702 hybrid contribution 1.073 1.488 0.595 1.929 sum 12.840 -5.107 3.000 14.140 Atomic orbital electron populations 1.69889 1.06155 1.26970 1.50493 1.24878 0.94647 0.98793 0.94532 0.86917 0.80267 0.84107 0.78765 1.19935 1.21281 1.19198 1.20786 0.87671 0.94817 1.50180 0.89972 1.21428 0.97546 0.85393 0.92568 0.94296 1.23513 0.97688 0.96729 1.01496 1.23866 0.94631 0.97794 0.97816 1.68901 1.15857 1.27726 1.05628 1.22559 0.99635 0.92256 0.96640 1.22782 1.04122 1.01781 0.90673 1.20763 0.76125 0.73911 0.89532 1.93191 1.63316 1.94470 1.65404 1.93162 1.91510 1.35358 1.97082 1.93161 1.55163 1.73124 1.95521 0.92529 0.92883 0.89059 0.92684 0.90931 0.93623 0.89480 0.86585 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.96 55.43 0.77 -26.18 15 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.87 20.83 26.93 -169.99 -4.58 16.25 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.27 -6.09 6.27 56.52 0.35 -5.73 15 7 C -0.50 -13.70 9.62 -34.44 -0.33 -14.03 15 8 H 0.08 2.52 8.06 -52.49 -0.42 2.09 15 9 C 0.14 3.17 2.10 -72.48 -0.15 3.02 15 10 H 0.04 0.91 6.39 -51.93 -0.33 0.58 15 11 C -0.16 -3.12 7.21 -26.10 -0.19 -3.31 15 12 C -0.01 -0.20 7.69 -7.54 -0.06 -0.26 15 13 N -0.46 -9.06 6.11 -237.66 -1.45 -10.51 15 14 C 0.02 0.31 4.53 -3.83 -0.02 0.29 15 15 C -0.15 -2.09 5.58 -26.73 -0.15 -2.24 15 16 C 0.45 6.05 3.16 37.15 0.12 6.17 15 17 F -0.18 -2.70 16.80 2.25 0.04 -2.66 15 18 F -0.19 -2.48 17.32 2.25 0.04 -2.44 15 19 F -0.19 -2.60 16.80 2.25 0.04 -2.56 15 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 21 H 0.05 0.99 7.92 -51.93 -0.41 0.58 15 22 H 0.09 1.90 8.12 -51.93 -0.42 1.48 15 23 H 0.05 0.85 7.45 -51.93 -0.39 0.47 15 24 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 25 H 0.05 0.73 7.01 -51.93 -0.36 0.36 15 26 H 0.09 1.60 7.77 -51.93 -0.40 1.19 15 27 H 0.12 1.55 8.14 -51.93 -0.42 1.12 15 28 H 0.10 1.23 8.14 -51.93 -0.42 0.80 15 LS Contribution 249.18 15.07 3.76 3.76 Total: -1.00 -28.97 249.18 -5.45 -34.42 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -3.19 Total: -1.71 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.88 Total: -8.37 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.68 Total: -36.68 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 0.11 Total: -7.67 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.58 Total: 16.25 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.97 -5.45 -34.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213595404.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.115 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds