Wall clock time and date at job start Mon Mar 30 2020 03:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48493 * 109.46967 * 269.99812 * 3 2 1 5 5 H 1.48499 * 109.47010 * 30.00145 * 3 2 1 6 6 H 1.48502 * 109.46769 * 149.99970 * 3 2 1 7 7 C 1.37877 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00096 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99665 * 180.02562 * 7 2 1 10 10 H 1.08997 * 112.75344 * 49.22357 * 9 7 2 11 11 C 1.53706 * 113.53255 * 278.39557 * 9 7 2 12 12 C 1.53517 * 83.51095 * 219.20572 * 11 9 7 13 13 N 1.47479 * 87.99753 * 26.02360 * 12 11 9 14 14 C 1.46893 * 111.00130 * 221.26429 * 13 12 11 15 15 C 1.53004 * 109.47371 * 268.47431 * 14 13 12 16 16 C 1.52993 * 109.47215 * 180.02562 * 15 14 13 17 17 F 1.39899 * 109.47455 * 59.99913 * 16 15 14 18 18 F 1.39897 * 109.47016 * 179.97438 * 16 15 14 19 19 F 1.39904 * 109.47395 * 299.99983 * 16 15 14 20 20 H 0.96997 * 120.00168 * 0.02562 * 1 2 3 21 21 H 1.08999 * 114.22234 * 105.58853 * 11 9 7 22 22 H 1.08992 * 114.16898 * 332.82638 * 11 9 7 23 23 H 1.09002 * 113.47888 * 271.22719 * 12 11 9 24 24 H 1.09003 * 113.47419 * 140.82052 * 12 11 9 25 25 H 1.08994 * 109.47380 * 28.47659 * 14 13 12 26 26 H 1.08998 * 109.46947 * 148.47439 * 14 13 12 27 27 H 1.09004 * 109.46578 * 300.00235 * 15 14 13 28 28 H 1.09000 * 109.46729 * 59.99406 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.9328 -0.5380 0.7618 11 6 4.1257 -0.9873 -1.3937 12 6 5.1400 -2.0336 -0.9106 13 7 4.0991 -2.5468 -0.0006 14 6 4.6649 -2.8755 1.3145 15 6 5.0946 -4.3439 1.3323 16 6 5.6835 -4.6864 2.7022 17 9 4.7183 -4.4710 3.6918 18 9 6.0758 -6.0291 2.7186 19 9 6.7942 -3.8725 2.9492 20 1 -0.4850 0.8400 -0.0004 21 1 4.5492 0.0043 -1.5532 22 1 3.4932 -1.3247 -2.2146 23 1 5.9958 -1.6016 -0.3918 24 1 5.4308 -2.7455 -1.6831 25 1 5.5304 -2.2414 1.5065 26 1 3.9133 -2.7076 2.0858 27 1 4.2291 -4.9780 1.1403 28 1 5.8463 -4.5118 0.5610 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213595404.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:32 Heat of formation + Delta-G solvation = -146.013352 kcal Electronic energy + Delta-G solvation = -15597.704196 eV Core-core repulsion = 12426.736498 eV Total energy + Delta-G solvation = -3170.967699 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -51.09244 -48.59080 -48.57527 -40.79225 -34.98231 -34.21491 -29.70898 -29.02851 -25.31916 -24.29958 -22.78032 -20.54790 -19.53727 -19.40398 -19.04226 -18.26072 -16.76008 -16.45983 -16.26621 -15.48926 -15.35312 -15.05429 -15.00714 -14.74739 -14.72872 -14.43393 -14.22588 -13.56215 -13.24559 -12.99079 -12.85440 -12.32893 -12.16365 -12.03226 -11.63351 -11.52149 -11.07183 -10.67311 -9.61633 -8.26910 -6.31105 1.36568 1.38397 1.47124 1.78661 2.35884 2.75569 3.02453 3.05727 3.11237 3.48418 3.81625 3.97437 4.05822 4.27476 4.42384 4.62142 4.68679 4.71746 4.86752 4.94086 5.08773 5.30657 5.46110 5.65040 6.26260 6.50727 6.73974 7.33706 8.90136 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.041048 B = 0.007293 C = 0.006931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.957581 B = 3838.220299 C = 4038.760344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.942 3.058 4 H -0.259 1.259 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.502 4.502 8 H 0.030 0.970 9 C 0.128 3.872 10 H 0.041 0.959 11 C -0.155 4.155 12 C 0.005 3.995 13 N -0.480 5.480 14 C 0.018 3.982 15 C -0.145 4.145 16 C 0.458 3.542 17 F -0.193 7.193 18 F -0.185 7.185 19 F -0.188 7.188 20 H 0.266 0.734 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.194 -5.644 2.120 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.168 1.168 7 C -0.540 4.540 8 H 0.049 0.951 9 C 0.019 3.981 10 H 0.059 0.941 11 C -0.193 4.193 12 C -0.124 4.124 13 N -0.202 5.202 14 C -0.111 4.111 15 C -0.183 4.183 16 C 0.403 3.597 17 F -0.175 7.175 18 F -0.166 7.166 19 F -0.169 7.169 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.662 -6.158 2.011 16.030 hybrid contribution 0.141 1.224 0.739 1.436 sum 14.803 -4.935 2.750 15.845 Atomic orbital electron populations 1.70060 1.08327 1.28093 1.52682 1.25801 0.95409 1.03068 0.94175 0.85803 0.79509 0.78545 0.79640 1.18402 1.21514 1.16795 1.21023 0.90645 0.92883 1.49498 0.95133 1.21364 0.94355 0.87738 0.94616 0.94137 1.23395 0.98249 0.98893 0.98769 1.23875 0.93943 0.97083 0.97453 1.68799 1.17770 1.26035 1.07615 1.22539 0.99290 0.94730 0.94575 1.22675 1.04859 0.99375 0.91411 1.20664 0.75873 0.74035 0.89098 1.93177 1.63842 1.94557 1.65924 1.93173 1.91425 1.35021 1.97030 1.93163 1.55084 1.73149 1.95513 0.92491 0.91077 0.90609 0.90069 0.88376 0.92089 0.92004 0.86702 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.22 13.96 21.45 0.30 -58.92 15 2 C 0.01 0.73 5.47 84.65 0.46 1.19 15 3 Si 0.94 42.57 26.93 68.60 1.85 44.41 15 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 15 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 6 H -0.24 -10.06 6.27 99.48 0.62 -9.43 15 7 C -0.50 -28.49 9.62 25.60 0.25 -28.25 15 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 15 9 C 0.13 5.71 2.10 41.51 0.09 5.79 15 10 H 0.04 1.80 6.39 -2.39 -0.02 1.79 15 11 C -0.15 -5.78 7.21 31.01 0.22 -5.56 15 12 C 0.00 0.15 7.69 83.58 0.64 0.79 15 13 N -0.48 -18.11 6.11 -905.82 -5.53 -23.64 15 14 C 0.02 0.57 4.53 86.31 0.39 0.96 15 15 C -0.14 -3.55 5.58 30.59 0.17 -3.38 15 16 C 0.46 11.31 3.16 71.98 0.23 11.54 15 17 F -0.19 -5.54 16.80 44.97 0.76 -4.78 15 18 F -0.19 -4.42 17.32 44.97 0.78 -3.64 15 19 F -0.19 -4.68 16.80 44.97 0.76 -3.92 15 20 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 21 H 0.07 2.39 7.92 -2.39 -0.02 2.37 15 22 H 0.08 3.05 8.12 -2.39 -0.02 3.03 15 23 H 0.08 2.07 7.45 -2.39 -0.02 2.05 15 24 H 0.10 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.06 1.74 7.01 -2.39 -0.02 1.73 15 26 H 0.06 2.26 7.77 -2.39 -0.02 2.24 15 27 H 0.11 2.88 8.14 -2.38 -0.02 2.86 15 28 H 0.13 2.54 8.14 -2.39 -0.02 2.52 15 Total: -1.00 -64.30 249.18 2.43 -61.87 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.08 Total: 5.53 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 2.45 Total: -16.91 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -5.23 Total: -82.56 kcal Atomic # 9 Polarization: -14.63 SS G_CDS: 2.29 Total: -12.34 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.85 Total: 44.41 kcal Total: -64.30 2.43 -61.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213595404.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.147 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds