Wall clock time and date at job start Mon Mar 30 2020 02:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47329 * 270.00295 * 3 2 1 5 5 H 1.48501 * 109.47237 * 30.00506 * 3 2 1 6 6 H 1.48497 * 109.46993 * 150.00481 * 3 2 1 7 7 C 1.37875 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99475 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00255 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.88121 * 6.02755 * 9 7 2 11 11 C 1.54321 * 109.88578 * 127.22071 * 9 7 2 12 12 C 1.55140 * 103.01912 * 141.68917 * 11 9 7 13 13 C 1.54906 * 101.65564 * 324.34799 * 12 11 9 14 14 N 1.47441 * 109.89031 * 244.98902 * 9 7 2 15 15 C 1.46899 * 111.00177 * 3.85382 * 14 9 7 16 16 C 1.52991 * 109.47658 * 164.86312 * 15 14 9 17 17 F 1.39902 * 109.47108 * 59.99872 * 16 15 14 18 18 F 1.39901 * 109.47668 * 180.02562 * 16 15 14 19 19 F 1.39901 * 109.47337 * 300.00243 * 16 15 14 20 20 H 0.97002 * 120.00285 * 359.97438 * 1 2 3 21 21 H 1.08993 * 110.70684 * 260.07247 * 11 9 7 22 22 H 1.08999 * 110.70723 * 23.30898 * 11 9 7 23 23 H 1.09002 * 110.99010 * 82.43844 * 12 11 9 24 24 H 1.08996 * 110.99381 * 206.21560 * 12 11 9 25 25 H 1.09002 * 110.37122 * 278.24421 * 13 12 11 26 26 H 1.08994 * 110.38137 * 155.89700 * 13 12 11 27 27 H 1.09007 * 109.47202 * 284.86653 * 15 14 9 28 28 H 1.09004 * 109.46946 * 44.86160 * 15 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.1828 -2.3105 -0.1077 11 6 1.7483 -3.3924 -1.1565 12 6 1.7385 -4.8119 -0.5305 13 6 2.1610 -4.5129 0.9295 14 7 1.5083 -3.2270 1.2556 15 6 2.3418 -2.4293 2.1650 16 6 2.2783 -3.0273 3.5718 17 9 2.7505 -4.3439 3.5406 18 9 3.0717 -2.2673 4.4379 19 9 0.9543 -3.0174 4.0234 20 1 -0.4851 0.8400 0.0004 21 1 1.0657 -3.3406 -2.0047 22 1 2.7578 -3.1099 -1.4551 23 1 0.7400 -5.2476 -0.5666 24 1 2.4633 -5.4606 -1.0223 25 1 3.2445 -4.4168 0.9989 26 1 1.8054 -5.2986 1.5960 27 1 3.3735 -2.4370 1.8131 28 1 1.9739 -1.4035 2.1893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213595545.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:18 Heat of formation + Delta-G solvation = -174.020684 kcal Electronic energy + Delta-G solvation = -16342.808482 eV Core-core repulsion = 13170.626294 eV Total energy + Delta-G solvation = -3172.182188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.93395 -48.48392 -48.38689 -39.77763 -34.72115 -33.43100 -30.25705 -28.60681 -26.29614 -23.97726 -21.87333 -21.29035 -19.39710 -19.32404 -18.95499 -17.46856 -16.90083 -16.13521 -15.92816 -15.45172 -15.29975 -14.88860 -14.83231 -14.61639 -14.58450 -14.24543 -13.78114 -13.61043 -13.26105 -12.82367 -12.42507 -12.28172 -12.06330 -11.87219 -11.77005 -11.23545 -11.11890 -10.68375 -9.13103 -8.15555 -6.31658 1.40013 1.43435 1.51656 1.92881 2.37820 2.85285 3.04842 3.25607 3.31121 3.82353 4.04120 4.15975 4.40078 4.48297 4.70646 4.86148 4.97042 5.04171 5.15105 5.32622 5.36326 5.58005 5.79825 5.89328 6.44676 6.47277 6.89893 7.34969 8.87173 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.013029 C = 0.009691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.234110 B = 2148.612414 C = 2888.669147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.028 3.972 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.182 3.818 10 H 0.047 0.953 11 C -0.128 4.128 12 C -0.121 4.121 13 C 0.036 3.964 14 N -0.542 5.542 15 C 0.040 3.960 16 C 0.454 3.546 17 F -0.187 7.187 18 F -0.189 7.189 19 F -0.188 7.188 20 H 0.265 0.735 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -6.061 2.893 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.078 3.922 10 H 0.066 0.934 11 C -0.167 4.167 12 C -0.158 4.158 13 C -0.091 4.091 14 N -0.267 5.267 15 C -0.091 4.091 16 C 0.399 3.601 17 F -0.168 7.168 18 F -0.171 7.171 19 F -0.170 7.170 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.784 -6.055 3.179 8.346 hybrid contribution 0.834 1.161 -0.156 1.438 sum 5.618 -4.894 3.023 8.041 Atomic orbital electron populations 1.70025 1.07478 1.27812 1.49751 1.25730 0.95441 1.02505 0.93726 0.85719 0.79051 0.79549 0.78447 1.20018 1.21103 1.18659 1.21547 0.93045 0.91645 1.51911 0.92426 1.20124 0.97669 0.90617 0.83831 0.93447 1.22811 1.00429 0.94979 0.98486 1.22674 1.01930 0.96649 0.94588 1.23228 0.96802 0.92018 0.97066 1.63722 1.42276 1.04399 1.16296 1.23054 0.99583 0.99938 0.86491 1.21012 0.72883 0.75977 0.90219 1.93113 1.88487 1.38294 1.96923 1.93126 1.74685 1.76119 1.73174 1.93134 1.36660 1.96303 1.90876 0.92528 0.92608 0.92529 0.91184 0.89235 0.93631 0.90501 0.90641 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.17 12.63 21.45 0.27 -50.90 15 2 C 0.03 1.46 5.32 84.65 0.45 1.91 15 3 Si 0.95 41.02 29.54 68.60 2.03 43.05 15 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.29 -12.37 7.11 99.48 0.71 -11.67 15 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 7 C -0.54 -27.30 5.43 25.60 0.14 -27.16 15 8 H 0.06 2.83 7.45 -2.91 -0.02 2.81 15 9 C 0.18 8.69 3.71 44.51 0.16 8.85 15 10 H 0.05 2.65 6.97 -2.39 -0.02 2.64 15 11 C -0.13 -5.06 6.46 31.78 0.21 -4.86 15 12 C -0.12 -3.89 7.08 31.98 0.23 -3.66 15 13 C 0.04 1.27 5.22 86.77 0.45 1.72 15 14 N -0.54 -23.17 5.05 -864.89 -4.37 -27.54 15 15 C 0.04 1.61 3.88 86.30 0.34 1.95 15 16 C 0.45 16.69 3.28 71.98 0.24 16.92 15 17 F -0.19 -6.38 15.13 44.97 0.68 -5.70 15 18 F -0.19 -6.60 17.32 44.97 0.78 -5.82 15 19 F -0.19 -7.50 17.24 44.97 0.78 -6.72 15 20 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 21 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.06 2.21 7.84 -2.39 -0.02 2.19 15 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.09 2.34 8.14 -2.39 -0.02 2.33 15 25 H 0.05 1.51 7.52 -2.39 -0.02 1.50 15 26 H 0.08 2.53 7.53 -2.39 -0.02 2.51 15 27 H 0.08 2.90 7.31 -2.38 -0.02 2.88 15 28 H 0.11 4.96 6.53 -2.38 -0.02 4.94 15 Total: -1.00 -54.76 242.49 3.54 -51.22 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.17 Total: 6.73 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 2.21 Total: -4.32 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -4.10 Total: -78.44 kcal Atomic # 9 Polarization: -20.47 SS G_CDS: 2.23 Total: -18.24 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -54.76 3.54 -51.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213595545.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.802 kcal (2) G-P(sol) polarization free energy of solvation -54.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds