Wall clock time and date at job start Mon Mar 30 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48491 * 109.47115 * 239.99234 * 3 2 1 5 5 H 1.48505 * 109.47001 * 119.99300 * 3 2 1 6 6 H 1.48497 * 109.47127 * 359.97438 * 3 2 1 7 7 C 1.37872 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.87498 * 334.07224 * 9 7 2 11 11 C 1.54318 * 109.88719 * 212.87288 * 9 7 2 12 12 C 1.55142 * 103.01834 * 218.30859 * 11 9 7 13 13 C 1.54898 * 101.65117 * 35.65685 * 12 11 9 14 14 N 1.47437 * 109.88703 * 95.10474 * 9 7 2 15 15 C 1.46899 * 111.00552 * 356.15068 * 14 9 7 16 16 C 1.52991 * 109.47422 * 177.09218 * 15 14 9 17 17 F 1.39900 * 109.47280 * 59.99973 * 16 15 14 18 18 F 1.39909 * 109.47052 * 179.97438 * 16 15 14 19 19 F 1.39906 * 109.47307 * 299.99578 * 16 15 14 20 20 H 0.97002 * 119.99600 * 179.97438 * 1 2 3 21 21 H 1.09000 * 110.70887 * 336.69741 * 11 9 7 22 22 H 1.09006 * 110.70201 * 99.92692 * 11 9 7 23 23 H 1.08999 * 110.98761 * 277.56362 * 12 11 9 24 24 H 1.09006 * 110.98599 * 153.74680 * 12 11 9 25 25 H 1.09005 * 110.37226 * 204.10044 * 13 12 11 26 26 H 1.08999 * 110.47454 * 81.80743 * 13 12 11 27 27 H 1.09001 * 109.46717 * 297.09204 * 15 14 9 28 28 H 1.09002 * 109.47339 * 57.08634 * 15 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2123 5 1 3.1028 1.6965 1.2126 6 1 1.2841 2.7464 -0.0006 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.2672 -2.3591 0.4483 11 6 2.0438 -3.5630 0.7887 12 6 1.8130 -4.8549 -0.0387 13 6 1.7939 -4.3009 -1.4850 14 7 1.1076 -2.9955 -1.3804 15 6 1.6564 -2.0334 -2.3454 16 6 1.5556 -2.6135 -3.7574 17 9 0.2141 -2.8668 -4.0630 18 9 2.0777 -1.6969 -4.6765 19 9 2.2825 -3.8070 -3.8243 20 1 -0.4850 -0.8401 -0.0004 21 1 3.1034 -3.3093 0.8200 22 1 1.6431 -3.6739 1.7964 23 1 0.8587 -5.3160 0.2155 24 1 2.6340 -5.5586 0.0992 25 1 1.2374 -4.9707 -2.1407 26 1 2.8103 -4.1666 -1.8553 27 1 1.0900 -1.1035 -2.2933 28 1 2.7016 -1.8360 -2.1073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213595607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:20 Heat of formation + Delta-G solvation = -156.186429 kcal Electronic energy + Delta-G solvation = -16521.951381 eV Core-core repulsion = 13350.542545 eV Total energy + Delta-G solvation = -3171.408836 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.50415 -47.08476 -46.90840 -38.25146 -33.01182 -31.84701 -28.22271 -27.04973 -24.10422 -22.47908 -20.52742 -19.91300 -17.95084 -17.90461 -17.07131 -16.00014 -15.06917 -14.67318 -13.98017 -13.87574 -13.81691 -13.44249 -13.39883 -13.20365 -13.12485 -12.84416 -12.17754 -11.79877 -11.43325 -11.00019 -10.79989 -10.45330 -10.42555 -10.26556 -10.17369 -9.72299 -8.93854 -8.60332 -7.34890 -6.54985 -4.33121 3.32892 3.34744 3.43967 3.53374 4.35997 4.44610 4.66383 4.78395 5.05766 5.35191 5.50749 5.60751 5.80225 6.14668 6.22251 6.29954 6.44070 6.55086 6.59052 6.74265 6.80515 7.30107 7.51949 8.00006 8.18737 8.23137 8.65471 9.41809 10.81372 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.013784 C = 0.010170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.706975 B = 2030.851442 C = 2752.467985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.032 3.968 3 Si 1.060 2.940 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.622 4.622 8 H 0.052 0.948 9 C 0.179 3.821 10 H 0.060 0.940 11 C -0.126 4.126 12 C -0.133 4.133 13 C 0.031 3.969 14 N -0.529 5.529 15 C 0.044 3.956 16 C 0.439 3.561 17 F -0.183 7.183 18 F -0.194 7.194 19 F -0.193 7.193 20 H 0.278 0.722 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.119 0.881 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -5.155 -3.826 7.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.177 4.177 3 Si 0.887 3.113 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.661 4.661 8 H 0.070 0.930 9 C 0.075 3.925 10 H 0.078 0.922 11 C -0.165 4.165 12 C -0.171 4.171 13 C -0.097 4.097 14 N -0.255 5.255 15 C -0.085 4.085 16 C 0.385 3.615 17 F -0.164 7.164 18 F -0.175 7.175 19 F -0.175 7.175 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.137 0.863 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.979 -3.580 -3.967 6.118 hybrid contribution 1.092 -1.695 -0.071 2.018 sum 4.071 -5.276 -4.038 7.792 Atomic orbital electron populations 1.70796 1.06830 1.31610 1.43325 1.25880 0.96442 1.02637 0.92743 0.83664 0.75194 0.75535 0.76894 1.21067 1.21215 1.20465 1.22151 0.94325 0.91774 1.57879 0.93008 1.20154 0.96649 0.92637 0.83024 0.92179 1.22809 1.00723 0.94473 0.98467 1.22711 1.00679 0.97768 0.95948 1.23270 0.97217 0.92596 0.96588 1.64211 1.52825 1.01113 1.07332 1.23112 1.03750 0.98023 0.83645 1.21461 0.73229 0.75581 0.91270 1.93142 1.34502 1.94303 1.94487 1.93122 1.86990 1.67098 1.70315 1.93100 1.78262 1.49181 1.96974 0.90944 0.92316 0.92565 0.91741 0.92316 0.91773 0.93675 0.86302 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 13.63 55.43 0.76 -24.21 15 2 C 0.03 0.83 4.51 -17.82 -0.08 0.75 15 3 Si 1.06 23.41 29.90 -169.99 -5.08 18.33 15 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.62 -15.80 5.69 -34.44 -0.20 -15.99 15 8 H 0.05 1.33 7.62 -52.48 -0.40 0.93 15 9 C 0.18 4.23 3.32 -67.88 -0.23 4.00 15 10 H 0.06 1.56 6.33 -51.93 -0.33 1.23 15 11 C -0.13 -2.54 6.46 -24.91 -0.16 -2.70 15 12 C -0.13 -2.34 7.08 -24.60 -0.17 -2.51 15 13 C 0.03 0.60 4.91 -2.30 -0.01 0.59 15 14 N -0.53 -11.65 5.19 -224.73 -1.17 -12.82 15 15 C 0.04 0.96 3.91 -3.83 -0.01 0.94 15 16 C 0.44 8.52 3.15 37.15 0.12 8.64 15 17 F -0.18 -3.68 17.24 2.25 0.04 -3.64 15 18 F -0.19 -3.63 17.32 2.25 0.04 -3.59 15 19 F -0.19 -3.57 13.75 2.25 0.03 -3.54 15 20 H 0.28 7.87 6.50 -40.82 -0.27 7.61 15 21 H 0.06 1.20 7.74 -51.93 -0.40 0.80 15 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.06 1.18 7.69 -51.93 -0.40 0.78 15 26 H 0.04 0.86 6.60 -51.93 -0.34 0.51 15 27 H 0.12 2.84 6.94 -51.93 -0.36 2.48 15 28 H 0.08 1.79 7.07 -51.93 -0.37 1.42 15 LS Contribution 238.28 15.07 3.59 3.59 Total: -1.00 -26.32 238.28 -5.47 -31.78 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -2.93 Total: 0.38 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.75 Total: -6.29 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.41 Total: -37.03 kcal Atomic # 9 Polarization: -10.87 SS G_CDS: 0.11 Total: -10.77 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.08 Total: 18.33 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -26.32 -5.47 -31.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213595607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.402 kcal (2) G-P(sol) polarization free energy of solvation -26.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds