Wall clock time and date at job start Mon Mar 30 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48491 * 109.47115 * 239.99234 * 3 2 1 5 5 H 1.48505 * 109.47001 * 119.99300 * 3 2 1 6 6 H 1.48497 * 109.47127 * 359.97438 * 3 2 1 7 7 C 1.37872 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.87498 * 334.07224 * 9 7 2 11 11 C 1.54318 * 109.88719 * 212.87288 * 9 7 2 12 12 C 1.55142 * 103.01834 * 218.30859 * 11 9 7 13 13 C 1.54898 * 101.65117 * 35.65685 * 12 11 9 14 14 N 1.47437 * 109.88703 * 95.10474 * 9 7 2 15 15 C 1.46899 * 111.00552 * 356.15068 * 14 9 7 16 16 C 1.52991 * 109.47422 * 177.09218 * 15 14 9 17 17 F 1.39900 * 109.47280 * 59.99973 * 16 15 14 18 18 F 1.39909 * 109.47052 * 179.97438 * 16 15 14 19 19 F 1.39906 * 109.47307 * 299.99578 * 16 15 14 20 20 H 0.97002 * 119.99600 * 179.97438 * 1 2 3 21 21 H 1.09000 * 110.70887 * 336.69741 * 11 9 7 22 22 H 1.09006 * 110.70201 * 99.92692 * 11 9 7 23 23 H 1.08999 * 110.98761 * 277.56362 * 12 11 9 24 24 H 1.09006 * 110.98599 * 153.74680 * 12 11 9 25 25 H 1.09005 * 110.37226 * 204.10044 * 13 12 11 26 26 H 1.08999 * 110.47454 * 81.80743 * 13 12 11 27 27 H 1.09001 * 109.46717 * 297.09204 * 15 14 9 28 28 H 1.09002 * 109.47339 * 57.08634 * 15 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2123 5 1 3.1028 1.6965 1.2126 6 1 1.2841 2.7464 -0.0006 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.2672 -2.3591 0.4483 11 6 2.0438 -3.5630 0.7887 12 6 1.8130 -4.8549 -0.0387 13 6 1.7939 -4.3009 -1.4850 14 7 1.1076 -2.9955 -1.3804 15 6 1.6564 -2.0334 -2.3454 16 6 1.5556 -2.6135 -3.7574 17 9 0.2141 -2.8668 -4.0630 18 9 2.0777 -1.6969 -4.6765 19 9 2.2825 -3.8070 -3.8243 20 1 -0.4850 -0.8401 -0.0004 21 1 3.1034 -3.3093 0.8200 22 1 1.6431 -3.6739 1.7964 23 1 0.8587 -5.3160 0.2155 24 1 2.6340 -5.5586 0.0992 25 1 1.2374 -4.9707 -2.1407 26 1 2.8103 -4.1666 -1.8553 27 1 1.0900 -1.1035 -2.2933 28 1 2.7016 -1.8360 -2.1073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213595607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:20 Heat of formation + Delta-G solvation = -172.453483 kcal Electronic energy + Delta-G solvation = -16522.656774 eV Core-core repulsion = 13350.542545 eV Total energy + Delta-G solvation = -3172.114229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -51.08357 -48.63200 -48.50880 -39.96001 -34.93663 -33.51335 -29.99186 -28.69436 -26.03942 -24.11796 -22.06572 -21.71797 -19.54908 -19.51632 -18.86404 -17.74340 -16.74171 -16.30190 -15.64004 -15.54192 -15.42298 -15.23570 -14.99827 -14.79345 -14.71587 -14.52243 -13.82649 -13.42336 -13.27176 -12.70925 -12.53082 -12.14287 -12.01620 -11.93813 -11.78324 -11.42326 -10.81558 -10.57968 -9.12978 -8.60972 -6.39532 1.55093 1.58729 1.78581 1.81145 2.53530 2.76510 2.97363 3.16662 3.24421 3.68282 3.92950 4.05561 4.25742 4.47842 4.59228 4.73483 4.84730 4.92047 5.01231 5.15073 5.22482 5.44892 5.73815 6.10935 6.27603 6.34653 6.61023 7.42135 8.73892 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.013784 C = 0.010170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.706975 B = 2030.851442 C = 2752.467985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 1.099 2.901 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.287 1.287 7 C -0.620 4.620 8 H 0.049 0.951 9 C 0.174 3.826 10 H 0.028 0.972 11 C -0.123 4.123 12 C -0.120 4.120 13 C 0.030 3.970 14 N -0.542 5.542 15 C 0.050 3.950 16 C 0.452 3.548 17 F -0.186 7.186 18 F -0.187 7.187 19 F -0.183 7.183 20 H 0.264 0.736 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 -6.060 -4.134 8.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.921 3.079 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.659 4.659 8 H 0.067 0.933 9 C 0.069 3.931 10 H 0.046 0.954 11 C -0.162 4.162 12 C -0.158 4.158 13 C -0.098 4.098 14 N -0.268 5.268 15 C -0.080 4.080 16 C 0.398 3.602 17 F -0.167 7.167 18 F -0.169 7.169 19 F -0.164 7.164 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.262 -4.512 -4.281 7.540 hybrid contribution 0.705 -1.474 0.012 1.634 sum 4.967 -5.987 -4.268 8.873 Atomic orbital electron populations 1.70908 1.07861 1.30760 1.46167 1.27023 0.96368 1.05792 0.92083 0.83158 0.74466 0.72175 0.78069 1.19326 1.19712 1.21229 1.22347 0.94147 0.92726 1.56676 0.93321 1.20080 0.95283 0.93387 0.84340 0.95436 1.22719 0.99868 0.94877 0.98758 1.22690 1.02433 0.96886 0.93816 1.23365 0.97248 0.91076 0.98078 1.64002 1.53921 1.02328 1.06516 1.22887 1.02777 0.97257 0.85048 1.20948 0.73226 0.75849 0.90209 1.93140 1.34857 1.94327 1.94411 1.93139 1.86859 1.66979 1.69881 1.93120 1.77958 1.48461 1.96888 0.92439 0.92507 0.91965 0.90944 0.89113 0.90680 0.93230 0.89077 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.82 13.63 21.45 0.29 -52.52 15 2 C -0.01 -0.53 4.51 84.65 0.38 -0.15 15 3 Si 1.10 46.90 29.90 68.60 2.05 48.95 15 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 15 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 6 H -0.29 -12.52 7.11 99.48 0.71 -11.81 15 7 C -0.62 -31.49 5.69 25.60 0.15 -31.34 15 8 H 0.05 2.46 7.62 -2.91 -0.02 2.44 15 9 C 0.17 8.20 3.32 44.52 0.15 8.35 15 10 H 0.03 1.48 6.33 -2.39 -0.02 1.46 15 11 C -0.12 -4.79 6.46 31.78 0.21 -4.58 15 12 C -0.12 -3.87 7.08 31.98 0.23 -3.64 15 13 C 0.03 1.07 4.91 86.77 0.43 1.49 15 14 N -0.54 -23.50 5.19 -864.93 -4.49 -27.99 15 15 C 0.05 2.14 3.91 86.30 0.34 2.48 15 16 C 0.45 16.90 3.15 71.98 0.23 17.13 15 17 F -0.19 -7.25 17.24 44.97 0.78 -6.48 15 18 F -0.19 -6.70 17.32 44.97 0.78 -5.93 15 19 F -0.18 -6.29 13.75 44.97 0.62 -5.68 15 20 H 0.26 15.54 6.50 -92.71 -0.60 14.94 15 21 H 0.06 2.21 7.74 -2.39 -0.02 2.19 15 22 H 0.06 2.31 8.14 -2.38 -0.02 2.29 15 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.09 2.38 8.14 -2.38 -0.02 2.36 15 25 H 0.07 2.54 7.69 -2.38 -0.02 2.53 15 26 H 0.05 1.74 6.60 -2.39 -0.02 1.72 15 27 H 0.09 4.42 6.94 -2.39 -0.02 4.40 15 28 H 0.08 3.34 7.07 -2.39 -0.02 3.33 15 Total: -1.00 -55.44 238.28 3.46 -51.98 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.34 Total: 7.92 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 2.10 Total: -10.26 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -4.19 Total: -80.51 kcal Atomic # 9 Polarization: -20.25 SS G_CDS: 2.17 Total: -18.08 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.05 Total: 48.95 kcal Total: -55.44 3.46 -51.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213595607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.477 kcal (2) G-P(sol) polarization free energy of solvation -55.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds