Wall clock time and date at job start Mon Mar 30 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35769 * 116.99893 * 2 1 4 4 C 1.38982 * 120.73119 * 0.02562 * 3 2 1 5 5 C 1.40371 * 119.03006 * 179.97438 * 4 3 2 6 6 C 1.41382 * 119.77253 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99616 * 7.39209 * 6 5 4 8 8 C 1.40009 * 120.00341 * 187.39757 * 6 5 4 9 9 N 1.30756 * 119.99822 * 7.39565 * 8 6 5 10 10 Si 1.86797 * 120.00002 * 187.39485 * 8 6 5 11 11 H 1.48496 * 109.47278 * 84.99091 * 10 8 6 12 12 H 1.48503 * 109.47065 * 204.99288 * 10 8 6 13 13 H 1.48498 * 109.47167 * 324.98914 * 10 8 6 14 14 N 1.33778 * 120.45930 * 359.97438 * 5 4 3 15 15 C 1.31875 * 121.57990 * 0.02562 * 14 5 4 16 16 O 1.35620 * 119.53110 * 179.97438 * 15 14 5 17 17 C 1.42910 * 116.99773 * 354.78839 * 16 15 14 18 18 C 1.39227 * 120.72706 * 180.02562 * 3 2 1 19 19 C 1.50700 * 120.27753 * 0.02562 * 18 3 2 20 20 H 1.09002 * 109.46916 * 300.00033 * 1 2 3 21 21 H 1.09006 * 109.47023 * 59.99442 * 1 2 3 22 22 H 1.08996 * 109.47489 * 180.02562 * 1 2 3 23 23 H 1.07992 * 120.48660 * 359.95894 * 4 3 2 24 24 H 0.96994 * 119.99785 * 180.02562 * 9 8 6 25 25 H 1.09007 * 109.46683 * 304.70312 * 17 16 15 26 26 H 1.08996 * 109.47503 * 64.70188 * 17 16 15 27 27 H 1.08997 * 109.46875 * 184.71139 * 17 16 15 28 28 H 1.09003 * 109.47368 * 270.02204 * 19 18 3 29 29 H 1.09005 * 109.46986 * 30.01941 * 19 18 3 30 30 H 1.09000 * 109.47308 * 150.01942 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.3034 2.3849 0.0005 5 6 1.9775 3.6161 0.0011 6 6 1.2382 4.8213 0.0022 7 1 0.1652 4.7964 0.1229 8 6 1.8969 6.0469 -0.1534 9 7 3.1716 6.0717 -0.4437 10 14 0.9548 7.6465 0.0536 11 1 0.9126 8.0135 1.4919 12 1 1.6328 8.7230 -0.7123 13 1 -0.4301 7.4746 -0.4542 14 7 3.3146 3.6572 0.0016 15 6 4.0394 2.5555 0.0011 16 8 5.3926 2.6455 0.0011 17 6 5.9557 3.9540 -0.1140 18 6 3.4347 1.3003 -0.0005 19 6 4.2776 0.0510 -0.0017 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.2240 2.3513 0.0003 24 1 3.6280 6.9208 -0.5511 25 1 5.5661 4.4397 -1.0088 26 1 5.6897 4.5426 0.7639 27 1 7.0406 3.8776 -0.1853 28 1 4.4809 -0.2512 1.0257 29 1 3.7429 -0.7475 -0.5162 30 1 5.2185 0.2479 -0.5155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214676855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:36 Heat of formation + Delta-G solvation = -50.410037 kcal Electronic energy + Delta-G solvation = -15400.522176 eV Core-core repulsion = 12775.556889 eV Total energy + Delta-G solvation = -2624.965287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.30713 -37.87840 -35.99365 -33.56293 -31.53778 -29.34111 -27.47768 -26.90076 -26.28806 -23.75570 -21.12394 -20.63860 -18.23698 -16.82949 -15.71201 -15.23997 -15.11115 -14.90193 -14.58358 -13.94347 -13.47797 -12.86708 -12.64311 -12.48284 -11.76522 -11.63055 -11.27744 -11.23455 -11.17756 -10.86614 -10.73119 -10.60104 -10.46916 -9.98716 -9.81800 -9.04985 -7.78042 -7.44450 -7.16876 -6.56649 -4.61714 2.71679 3.02176 3.03835 3.06083 3.16243 3.85667 3.89156 4.62520 4.67663 5.63544 5.68411 5.79468 5.89413 6.09896 6.15500 6.23152 6.37051 6.40011 6.64023 6.65110 6.68188 6.77649 6.86846 7.05744 7.29526 7.49934 7.69703 8.01962 8.22471 8.46157 8.63945 8.95152 9.96837 10.21134 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.025353 B = 0.011148 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.159484 B = 2511.127252 C = 3580.066227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.324 6.324 3 C 0.199 3.801 4 C -0.381 4.381 5 C 0.308 3.692 6 C -0.429 4.429 7 H 0.085 0.915 8 C 0.074 3.926 9 N -0.717 5.717 10 Si 0.909 3.091 11 H -0.267 1.267 12 H -0.277 1.277 13 H -0.262 1.262 14 N -0.545 5.545 15 C 0.361 3.639 16 O -0.324 6.324 17 C 0.055 3.945 18 C -0.319 4.319 19 C -0.058 4.058 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.274 0.726 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 -2.776 0.196 2.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.236 6.236 3 C 0.150 3.850 4 C -0.404 4.404 5 C 0.184 3.816 6 C -0.460 4.460 7 H 0.103 0.897 8 C -0.152 4.152 9 N -0.338 5.338 10 Si 0.733 3.267 11 H -0.192 1.192 12 H -0.202 1.202 13 H -0.186 1.186 14 N -0.274 5.274 15 C 0.174 3.826 16 O -0.232 6.232 17 C -0.041 4.041 18 C -0.324 4.324 19 C -0.116 4.116 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.104 0.896 23 H 0.125 0.875 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.075 -2.220 0.149 2.226 hybrid contribution -1.144 0.439 0.091 1.229 sum -1.219 -1.781 0.240 2.172 Atomic orbital electron populations 1.22835 0.79733 1.02071 1.01311 1.85876 1.20259 1.28374 1.89130 1.18396 0.90793 0.83106 0.92743 1.21624 0.98744 0.92628 1.27390 1.17855 0.86583 0.91332 0.85803 1.19569 0.94790 0.89477 1.42189 0.89675 1.26043 0.94904 1.01059 0.93172 1.70051 1.09208 1.27359 1.27150 0.86320 0.80576 0.80455 0.79333 1.19247 1.20156 1.18602 1.68307 1.07585 1.25652 1.25883 1.19394 0.83461 0.89409 0.90300 1.86030 1.17726 1.31216 1.88253 1.22540 0.95325 0.83290 1.02965 1.18241 0.90286 0.93558 1.30359 1.19936 0.97705 0.94479 0.99478 0.93176 0.93149 0.89590 0.87496 0.91505 0.92055 0.93015 0.91237 0.94517 0.93671 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.84 101.05 0.99 1.57 16 2 O -0.32 -6.77 9.65 -19.02 -0.18 -6.95 16 3 C 0.20 4.82 6.69 -38.94 -0.26 4.56 16 4 C -0.38 -9.56 8.83 -38.50 -0.34 -9.90 16 5 C 0.31 8.47 6.52 -85.02 -0.55 7.92 16 6 C -0.43 -11.30 9.13 -37.72 -0.34 -11.64 16 7 H 0.09 2.09 7.86 -52.48 -0.41 1.68 16 8 C 0.07 1.83 5.47 -17.35 -0.09 1.74 16 9 N -0.72 -18.27 11.57 55.55 0.64 -17.63 16 10 Si 0.91 18.12 29.57 -169.99 -5.03 13.10 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 12 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 13 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 14 N -0.54 -15.06 6.81 -11.25 -0.08 -15.13 16 15 C 0.36 9.39 7.47 -17.13 -0.13 9.26 16 16 O -0.32 -7.62 9.52 -18.56 -0.18 -7.80 16 17 C 0.05 1.11 10.39 101.05 1.05 2.16 16 18 C -0.32 -7.86 5.95 -103.85 -0.62 -8.48 16 19 C -0.06 -1.22 9.60 36.01 0.35 -0.88 16 20 H 0.05 0.78 7.70 -51.93 -0.40 0.38 16 21 H 0.05 0.79 7.70 -51.93 -0.40 0.39 16 22 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.11 2.44 6.44 -52.49 -0.34 2.10 16 24 H 0.27 6.30 8.29 -40.82 -0.34 5.97 16 25 H 0.06 1.34 8.05 -51.92 -0.42 0.92 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.89 7.60 -51.93 -0.39 0.49 16 30 H 0.05 0.98 7.54 -51.93 -0.39 0.59 16 LS Contribution 262.05 15.07 3.95 3.95 Total: -1.00 -29.56 262.05 -4.40 -33.96 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.58 Total: 0.20 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.05 Total: -3.69 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.57 Total: -32.76 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.36 Total: -14.75 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.56 -4.40 -33.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214676855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.454 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds