Wall clock time and date at job start Mon Mar 30 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35769 * 116.99893 * 2 1 4 4 C 1.38982 * 120.73119 * 0.02562 * 3 2 1 5 5 C 1.40371 * 119.03006 * 179.97438 * 4 3 2 6 6 C 1.41382 * 119.77253 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99616 * 7.39209 * 6 5 4 8 8 C 1.40009 * 120.00341 * 187.39757 * 6 5 4 9 9 N 1.30756 * 119.99822 * 7.39565 * 8 6 5 10 10 Si 1.86797 * 120.00002 * 187.39485 * 8 6 5 11 11 H 1.48496 * 109.47278 * 84.99091 * 10 8 6 12 12 H 1.48503 * 109.47065 * 204.99288 * 10 8 6 13 13 H 1.48498 * 109.47167 * 324.98914 * 10 8 6 14 14 N 1.33778 * 120.45930 * 359.97438 * 5 4 3 15 15 C 1.31875 * 121.57990 * 0.02562 * 14 5 4 16 16 O 1.35620 * 119.53110 * 179.97438 * 15 14 5 17 17 C 1.42910 * 116.99773 * 354.78839 * 16 15 14 18 18 C 1.39227 * 120.72706 * 180.02562 * 3 2 1 19 19 C 1.50700 * 120.27753 * 0.02562 * 18 3 2 20 20 H 1.09002 * 109.46916 * 300.00033 * 1 2 3 21 21 H 1.09006 * 109.47023 * 59.99442 * 1 2 3 22 22 H 1.08996 * 109.47489 * 180.02562 * 1 2 3 23 23 H 1.07992 * 120.48660 * 359.95894 * 4 3 2 24 24 H 0.96994 * 119.99785 * 180.02562 * 9 8 6 25 25 H 1.09007 * 109.46683 * 304.70312 * 17 16 15 26 26 H 1.08996 * 109.47503 * 64.70188 * 17 16 15 27 27 H 1.08997 * 109.46875 * 184.71139 * 17 16 15 28 28 H 1.09003 * 109.47368 * 270.02204 * 19 18 3 29 29 H 1.09005 * 109.46986 * 30.01941 * 19 18 3 30 30 H 1.09000 * 109.47308 * 150.01942 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.3034 2.3849 0.0005 5 6 1.9775 3.6161 0.0011 6 6 1.2382 4.8213 0.0022 7 1 0.1652 4.7964 0.1229 8 6 1.8969 6.0469 -0.1534 9 7 3.1716 6.0717 -0.4437 10 14 0.9548 7.6465 0.0536 11 1 0.9126 8.0135 1.4919 12 1 1.6328 8.7230 -0.7123 13 1 -0.4301 7.4746 -0.4542 14 7 3.3146 3.6572 0.0016 15 6 4.0394 2.5555 0.0011 16 8 5.3926 2.6455 0.0011 17 6 5.9557 3.9540 -0.1140 18 6 3.4347 1.3003 -0.0005 19 6 4.2776 0.0510 -0.0017 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.2240 2.3513 0.0003 24 1 3.6280 6.9208 -0.5511 25 1 5.5661 4.4397 -1.0088 26 1 5.6897 4.5426 0.7639 27 1 7.0406 3.8776 -0.1853 28 1 4.4809 -0.2512 1.0257 29 1 3.7429 -0.7475 -0.5162 30 1 5.2185 0.2479 -0.5155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214676855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:36 Heat of formation + Delta-G solvation = -70.353116 kcal Electronic energy + Delta-G solvation = -15401.386973 eV Core-core repulsion = 12775.556889 eV Total energy + Delta-G solvation = -2625.830084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.12397 -39.60172 -37.82045 -35.40975 -33.36064 -31.24014 -29.27332 -28.46096 -27.90361 -25.58012 -22.94683 -22.50707 -20.03686 -18.70867 -17.46860 -16.95948 -16.79979 -16.67757 -16.25591 -15.58040 -15.32361 -14.59577 -14.32354 -14.16317 -13.40307 -13.29331 -12.99732 -12.87949 -12.80740 -12.57671 -12.35915 -12.28396 -12.07230 -11.76688 -11.58435 -10.87802 -9.72357 -9.29183 -9.08952 -8.41745 -6.57805 0.85128 1.12623 1.41048 1.52980 1.54667 2.19961 2.23150 2.76976 2.97393 3.81176 4.26994 4.39453 4.42260 4.43804 4.60473 4.65853 4.66108 4.71863 4.87654 4.95725 5.01177 5.02932 5.10438 5.19069 5.53623 5.63922 5.84598 6.08470 6.40312 6.59218 6.76853 7.02329 8.02079 8.38608 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.025353 B = 0.011148 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.159484 B = 2511.127252 C = 3580.066227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.327 6.327 3 C 0.200 3.800 4 C -0.395 4.395 5 C 0.273 3.727 6 C -0.459 4.459 7 H 0.093 0.907 8 C 0.029 3.971 9 N -0.747 5.747 10 Si 0.989 3.011 11 H -0.265 1.265 12 H -0.267 1.267 13 H -0.255 1.255 14 N -0.569 5.569 15 C 0.340 3.660 16 O -0.326 6.326 17 C 0.060 3.940 18 C -0.338 4.338 19 C -0.050 4.050 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.129 0.871 23 H 0.122 0.878 24 H 0.282 0.718 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.118 0.882 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 -2.900 0.272 3.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.240 6.240 3 C 0.149 3.851 4 C -0.418 4.418 5 C 0.149 3.851 6 C -0.489 4.489 7 H 0.111 0.889 8 C -0.194 4.194 9 N -0.368 5.368 10 Si 0.809 3.191 11 H -0.190 1.190 12 H -0.191 1.191 13 H -0.178 1.178 14 N -0.299 5.299 15 C 0.154 3.846 16 O -0.234 6.234 17 C -0.035 4.035 18 C -0.344 4.344 19 C -0.107 4.107 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.147 0.853 23 H 0.139 0.861 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.602 -2.377 0.222 2.463 hybrid contribution -0.978 0.387 0.060 1.054 sum -1.580 -1.990 0.282 2.557 Atomic orbital electron populations 1.23212 0.77022 1.05000 1.01515 1.85869 1.22948 1.26581 1.88598 1.18497 0.90968 0.83957 0.91662 1.21781 0.99588 0.92493 1.27893 1.18368 0.87104 0.92792 0.86819 1.19946 0.95372 0.90333 1.43262 0.88919 1.26966 0.95820 1.04293 0.92294 1.70130 1.10733 1.28806 1.27124 0.85117 0.79180 0.75512 0.79263 1.18954 1.19141 1.17842 1.68264 1.07970 1.26748 1.26948 1.19780 0.84320 0.89857 0.90647 1.86022 1.16632 1.32616 1.88104 1.22651 0.97726 0.81952 1.01209 1.18748 0.91296 0.94538 1.29782 1.19907 0.97397 0.93093 1.00328 0.92914 0.92982 0.85321 0.86050 0.90727 0.94029 0.94554 0.86408 0.93516 0.92525 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.84 113.37 1.12 1.91 16 2 O -0.33 -13.17 9.65 -90.97 -0.88 -14.05 16 3 C 0.20 9.60 6.69 22.69 0.15 9.76 16 4 C -0.40 -20.00 8.83 22.97 0.20 -19.80 16 5 C 0.27 15.36 6.52 40.14 0.26 15.62 16 6 C -0.46 -24.51 9.13 23.47 0.21 -24.30 16 7 H 0.09 4.60 7.86 -2.91 -0.02 4.58 16 8 C 0.03 1.46 5.47 85.28 0.47 1.92 16 9 N -0.75 -38.66 11.57 21.83 0.25 -38.41 16 10 Si 0.99 36.91 29.57 68.60 2.03 38.94 16 11 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 12 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 13 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 14 N -0.57 -32.26 6.81 -302.60 -2.06 -34.32 16 15 C 0.34 17.94 7.47 84.95 0.63 18.57 16 16 O -0.33 -15.31 9.52 -89.32 -0.85 -16.16 16 17 C 0.06 2.43 10.39 113.37 1.18 3.61 16 18 C -0.34 -16.65 5.95 -19.36 -0.12 -16.76 16 19 C -0.05 -2.02 9.60 71.24 0.68 -1.33 16 20 H 0.05 1.54 7.70 -2.39 -0.02 1.52 16 21 H 0.05 1.53 7.70 -2.38 -0.02 1.51 16 22 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 23 H 0.12 5.55 6.44 -2.91 -0.02 5.53 16 24 H 0.28 13.09 8.29 -92.71 -0.77 12.33 16 25 H 0.04 1.84 8.05 -2.38 -0.02 1.82 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 2.12 7.60 -2.38 -0.02 2.11 16 30 H 0.05 2.10 7.54 -2.39 -0.02 2.08 16 Total: -1.00 -64.35 262.05 4.43 -59.92 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.14 Total: 14.88 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.79 Total: -10.79 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.81 Total: -72.73 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.73 Total: -30.21 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Total: -64.35 4.43 -59.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214676855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.434 kcal (2) G-P(sol) polarization free energy of solvation -64.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds