Wall clock time and date at job start Mon Mar 30 2020 03:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35556 * 116.99802 * 2 1 4 4 C 1.38864 * 120.94050 * 0.20339 * 3 2 1 5 5 C 1.38180 * 119.49840 * 180.23782 * 4 3 2 6 6 C 1.50701 * 119.24255 * 179.78503 * 5 4 3 7 7 N 1.32196 * 121.50569 * 359.80288 * 5 4 3 8 8 C 1.31998 * 122.06807 * 359.97438 * 7 5 4 9 9 O 1.35437 * 119.85374 * 179.97438 * 8 7 5 10 10 C 1.42896 * 116.99856 * 5.12873 * 9 8 7 11 11 C 1.41381 * 120.29492 * 359.97405 * 8 7 5 12 12 C 1.40997 * 120.74879 * 179.97438 * 11 8 7 13 13 H 1.08006 * 119.99440 * 40.71669 * 12 11 8 14 14 C 1.39914 * 120.00064 * 220.71334 * 12 11 8 15 15 N 1.30918 * 120.00004 * 203.67180 * 14 12 11 16 16 Si 1.86796 * 120.00210 * 23.67514 * 14 12 11 17 17 H 1.48500 * 109.47398 * 265.28548 * 16 14 12 18 18 H 1.48502 * 109.47339 * 25.28824 * 16 14 12 19 19 H 1.48504 * 109.47183 * 145.28613 * 16 14 12 20 20 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47399 * 300.00596 * 1 2 3 22 22 H 1.09009 * 109.47057 * 60.00032 * 1 2 3 23 23 H 1.07992 * 120.25311 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.47176 * 270.01487 * 6 5 4 25 25 H 1.08996 * 109.47138 * 30.02464 * 6 5 4 26 26 H 1.09003 * 109.46755 * 150.02138 * 6 5 4 27 27 H 1.09002 * 109.47211 * 300.21857 * 10 9 8 28 28 H 1.09000 * 109.47352 * 60.21767 * 10 9 8 29 29 H 1.09005 * 109.46957 * 180.21659 * 10 9 8 30 30 H 0.96997 * 120.00268 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 1.3072 2.3847 0.0042 5 6 1.9653 3.5997 -0.0009 6 6 1.1596 4.8733 -0.0012 7 7 3.2854 3.6704 -0.0059 8 6 4.0450 2.5909 -0.0057 9 8 5.3936 2.7156 -0.0115 10 6 5.9233 4.0384 0.0963 11 6 3.4571 1.3052 0.0004 12 6 4.2594 0.1457 0.0000 13 1 5.1523 0.1068 0.6064 14 6 3.8987 -0.9544 -0.7857 15 7 4.3241 -2.1517 -0.4703 16 14 2.8103 -0.7147 -2.2848 17 1 1.3936 -0.9582 -1.9119 18 1 2.9582 0.6749 -2.7869 19 1 3.2137 -1.6706 -3.3473 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8901 23 1 0.2279 2.3506 0.0072 24 1 0.9617 5.1777 -1.0289 25 1 0.2152 4.7059 0.5166 26 1 1.7194 5.6574 0.5086 27 1 5.5668 4.6417 -0.7386 28 1 5.5948 4.4860 1.0343 29 1 7.0123 3.9965 0.0755 30 1 4.0738 -2.9144 -1.0148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214676929.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:52 Heat of formation + Delta-G solvation = -41.053893 kcal Electronic energy + Delta-G solvation = -15674.726181 eV Core-core repulsion = 13050.166606 eV Total energy + Delta-G solvation = -2624.559575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.56999 -37.90835 -36.20232 -33.77634 -31.47811 -30.06420 -27.96920 -27.04272 -26.29696 -23.75144 -21.23051 -20.89975 -17.85167 -17.15016 -16.45181 -15.56204 -15.19576 -14.82801 -14.63744 -13.90550 -13.53611 -13.18743 -12.94312 -12.65750 -12.21991 -11.84577 -11.73035 -11.39453 -11.12842 -10.98075 -10.92242 -10.55701 -10.21711 -9.88352 -9.75518 -9.01249 -8.45953 -7.72229 -7.29425 -6.80448 -4.23850 2.33158 2.60087 3.17123 3.27261 3.38685 3.95423 4.17047 4.55919 4.67824 5.23425 5.38974 5.62361 5.70561 5.79965 5.88554 5.95468 5.98979 6.04003 6.16660 6.18623 6.29973 6.34925 6.53938 7.00311 7.11403 7.30805 7.42840 8.07018 8.38595 8.48533 8.72077 8.87887 9.26039 10.20841 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.023870 B = 0.014948 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.756466 B = 1872.734839 C = 2696.647540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.292 6.292 3 C 0.056 3.944 4 C -0.235 4.235 5 C 0.051 3.949 6 C -0.076 4.076 7 N -0.532 5.532 8 C 0.245 3.755 9 O -0.296 6.296 10 C 0.047 3.953 11 C 0.021 3.979 12 C -0.429 4.429 13 H 0.096 0.904 14 C 0.102 3.898 15 N -0.804 5.804 16 Si 0.909 3.091 17 H -0.250 1.250 18 H -0.263 1.263 19 H -0.293 1.293 20 H 0.086 0.914 21 H 0.047 0.953 22 H 0.042 0.958 23 H 0.113 0.887 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 6.052 -0.844 8.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.205 6.205 3 C 0.005 3.995 4 C -0.256 4.256 5 C -0.084 4.084 6 C -0.133 4.133 7 N -0.258 5.258 8 C 0.063 3.937 9 O -0.203 6.203 10 C -0.050 4.050 11 C 0.015 3.985 12 C -0.458 4.458 13 H 0.114 0.886 14 C -0.117 4.117 15 N -0.428 5.428 16 Si 0.736 3.264 17 H -0.175 1.175 18 H -0.187 1.187 19 H -0.220 1.220 20 H 0.105 0.895 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.130 0.870 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.981 6.175 -0.869 7.981 hybrid contribution -1.121 -0.449 -0.594 1.346 sum -6.103 5.726 -1.464 8.495 Atomic orbital electron populations 1.22778 0.80994 1.02435 1.00195 1.86160 1.18890 1.26516 1.88933 1.18964 0.91676 0.83628 1.05214 1.21328 0.99056 0.92800 1.12448 1.19679 0.88243 0.93378 1.07077 1.20321 0.97627 0.94464 1.00922 1.66497 1.07107 1.32568 1.19632 1.19677 0.82982 0.88704 1.02373 1.86179 1.16926 1.28519 1.88694 1.22569 0.97467 0.84007 1.00932 1.16937 0.88766 0.92130 1.00631 1.18919 1.09296 0.94363 1.23191 0.88635 1.25940 0.93597 0.93616 0.98538 1.69773 1.38151 0.99473 1.35437 0.86360 0.81546 0.79161 0.79367 1.17502 1.18714 1.22034 0.89517 0.93486 0.93914 0.86955 0.92662 0.92507 0.92153 0.93458 0.93821 0.90136 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.07 101.05 0.92 1.47 16 2 O -0.29 -6.82 5.98 -18.36 -0.11 -6.93 16 3 C 0.06 1.37 5.28 -38.06 -0.20 1.17 16 4 C -0.23 -5.08 8.70 -39.37 -0.34 -5.43 16 5 C 0.05 1.10 6.78 -82.46 -0.56 0.54 16 6 C -0.08 -1.24 10.15 36.01 0.37 -0.87 16 7 N -0.53 -12.57 9.09 -8.95 -0.08 -12.65 16 8 C 0.25 6.27 7.53 -16.29 -0.12 6.15 16 9 O -0.30 -7.11 9.94 -18.00 -0.18 -7.29 16 10 C 0.05 0.85 10.41 101.05 1.05 1.90 16 11 C 0.02 0.57 4.76 -106.37 -0.51 0.06 16 12 C -0.43 -12.24 8.94 -37.91 -0.34 -12.58 16 13 H 0.10 2.88 8.06 -52.48 -0.42 2.46 16 14 C 0.10 2.81 4.85 -17.31 -0.08 2.72 16 15 N -0.80 -22.18 13.93 55.55 0.77 -21.40 16 16 Si 0.91 21.95 24.84 -169.99 -4.22 17.73 16 17 H -0.25 -5.63 5.43 56.52 0.31 -5.32 16 18 H -0.26 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 21 H 0.05 0.72 7.70 -51.93 -0.40 0.32 16 22 H 0.04 0.69 7.72 -51.92 -0.40 0.29 16 23 H 0.11 2.05 6.44 -52.49 -0.34 1.71 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.84 8.04 -51.93 -0.42 0.42 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 LS Contribution 254.93 15.07 3.84 3.84 Total: -1.00 -30.78 254.93 -3.54 -34.32 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.74 Total: -2.74 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.18 Total: -4.88 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.69 Total: -34.05 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.29 Total: -14.22 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.22 Total: 17.73 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.78 -3.54 -34.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214676929.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.735 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds