Wall clock time and date at job start Mon Mar 30 2020 03:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35556 * 116.99802 * 2 1 4 4 C 1.38864 * 120.94050 * 0.20339 * 3 2 1 5 5 C 1.38180 * 119.49840 * 180.23782 * 4 3 2 6 6 C 1.50701 * 119.24255 * 179.78503 * 5 4 3 7 7 N 1.32196 * 121.50569 * 359.80288 * 5 4 3 8 8 C 1.31998 * 122.06807 * 359.97438 * 7 5 4 9 9 O 1.35437 * 119.85374 * 179.97438 * 8 7 5 10 10 C 1.42896 * 116.99856 * 5.12873 * 9 8 7 11 11 C 1.41381 * 120.29492 * 359.97405 * 8 7 5 12 12 C 1.40997 * 120.74879 * 179.97438 * 11 8 7 13 13 H 1.08006 * 119.99440 * 40.71669 * 12 11 8 14 14 C 1.39914 * 120.00064 * 220.71334 * 12 11 8 15 15 N 1.30918 * 120.00004 * 203.67180 * 14 12 11 16 16 Si 1.86796 * 120.00210 * 23.67514 * 14 12 11 17 17 H 1.48500 * 109.47398 * 265.28548 * 16 14 12 18 18 H 1.48502 * 109.47339 * 25.28824 * 16 14 12 19 19 H 1.48504 * 109.47183 * 145.28613 * 16 14 12 20 20 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47399 * 300.00596 * 1 2 3 22 22 H 1.09009 * 109.47057 * 60.00032 * 1 2 3 23 23 H 1.07992 * 120.25311 * 359.97438 * 4 3 2 24 24 H 1.08996 * 109.47176 * 270.01487 * 6 5 4 25 25 H 1.08996 * 109.47138 * 30.02464 * 6 5 4 26 26 H 1.09003 * 109.46755 * 150.02138 * 6 5 4 27 27 H 1.09002 * 109.47211 * 300.21857 * 10 9 8 28 28 H 1.09000 * 109.47352 * 60.21767 * 10 9 8 29 29 H 1.09005 * 109.46957 * 180.21659 * 10 9 8 30 30 H 0.96997 * 120.00268 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 1.3072 2.3847 0.0042 5 6 1.9653 3.5997 -0.0009 6 6 1.1596 4.8733 -0.0012 7 7 3.2854 3.6704 -0.0059 8 6 4.0450 2.5909 -0.0057 9 8 5.3936 2.7156 -0.0115 10 6 5.9233 4.0384 0.0963 11 6 3.4571 1.3052 0.0004 12 6 4.2594 0.1457 0.0000 13 1 5.1523 0.1068 0.6064 14 6 3.8987 -0.9544 -0.7857 15 7 4.3241 -2.1517 -0.4703 16 14 2.8103 -0.7147 -2.2848 17 1 1.3936 -0.9582 -1.9119 18 1 2.9582 0.6749 -2.7869 19 1 3.2137 -1.6706 -3.3473 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8901 23 1 0.2279 2.3506 0.0072 24 1 0.9617 5.1777 -1.0289 25 1 0.2152 4.7059 0.5166 26 1 1.7194 5.6574 0.5086 27 1 5.5668 4.6417 -0.7386 28 1 5.5948 4.4860 1.0343 29 1 7.0123 3.9965 0.0755 30 1 4.0738 -2.9144 -1.0148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214676929.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:52 Heat of formation + Delta-G solvation = -64.615192 kcal Electronic energy + Delta-G solvation = -15675.747875 eV Core-core repulsion = 13050.166606 eV Total energy + Delta-G solvation = -2625.581269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.37635 -39.66267 -37.95783 -35.68368 -33.27907 -31.82115 -29.60837 -28.54082 -27.85270 -25.53378 -23.00913 -22.67517 -19.77061 -18.90802 -18.21689 -17.32119 -16.93083 -16.57761 -16.36351 -15.50321 -15.33738 -14.87533 -14.55170 -14.36452 -13.78908 -13.53846 -13.11377 -12.95685 -12.78034 -12.65821 -12.45842 -12.35319 -11.98150 -11.62789 -11.51696 -10.91320 -10.30718 -9.51287 -9.14745 -8.76782 -6.28411 0.50839 0.73525 1.27480 1.36004 1.46431 2.21891 2.31421 2.65551 3.02024 3.32750 3.76103 4.17044 4.32726 4.42453 4.45628 4.52486 4.54546 4.63328 4.71394 4.74344 4.88415 4.95422 5.03595 5.21651 5.36720 5.50383 5.70684 6.13546 6.35274 6.70670 6.83687 6.94837 7.41133 8.32096 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.023870 B = 0.014948 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.756466 B = 1872.734839 C = 2696.647540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.319 6.319 3 C 0.072 3.928 4 C -0.246 4.246 5 C 0.073 3.927 6 C -0.075 4.075 7 N -0.544 5.544 8 C 0.236 3.764 9 O -0.324 6.324 10 C 0.042 3.958 11 C -0.023 4.023 12 C -0.474 4.474 13 H 0.048 0.952 14 C 0.069 3.931 15 N -0.853 5.853 16 Si 0.957 3.043 17 H -0.221 1.221 18 H -0.285 1.285 19 H -0.282 1.282 20 H 0.109 0.891 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.157 0.843 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.113 0.887 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 8.330 -1.410 12.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.233 6.233 3 C 0.021 3.979 4 C -0.267 4.267 5 C -0.063 4.063 6 C -0.133 4.133 7 N -0.271 5.271 8 C 0.056 3.944 9 O -0.232 6.232 10 C -0.053 4.053 11 C -0.028 4.028 12 C -0.505 4.505 13 H 0.067 0.933 14 C -0.144 4.144 15 N -0.481 5.481 16 Si 0.781 3.219 17 H -0.145 1.145 18 H -0.211 1.211 19 H -0.209 1.209 20 H 0.127 0.873 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.175 0.825 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.191 8.449 -1.424 11.854 hybrid contribution -0.272 -0.803 -0.327 0.909 sum -8.463 7.646 -1.751 11.539 Atomic orbital electron populations 1.23242 0.77705 1.04788 1.02174 1.86135 1.22325 1.26324 1.88482 1.19232 0.91132 0.85204 1.02371 1.21787 1.01267 0.91511 1.12166 1.20891 0.88031 0.95917 1.01439 1.20507 0.98176 0.91631 1.02964 1.66713 1.08122 1.31531 1.20698 1.19943 0.83803 0.89026 1.01649 1.86151 1.16726 1.31801 1.88496 1.22880 0.99285 0.81782 1.01326 1.17218 0.90389 0.92186 1.03027 1.18666 1.09310 0.96706 1.25772 0.93339 1.26499 0.94829 0.93057 1.00047 1.69804 1.41031 1.00110 1.37123 0.85670 0.81788 0.77717 0.76749 1.14480 1.21069 1.20887 0.87314 0.91202 0.91989 0.82527 0.90472 0.89139 0.91329 0.92931 0.93287 0.86869 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.07 113.37 1.03 1.49 16 2 O -0.32 -14.32 5.98 -88.63 -0.53 -14.85 16 3 C 0.07 3.45 5.28 23.25 0.12 3.57 16 4 C -0.25 -9.67 8.70 22.41 0.19 -9.47 16 5 C 0.07 2.87 6.78 42.49 0.29 3.16 16 6 C -0.08 -2.02 10.15 71.24 0.72 -1.30 16 7 N -0.54 -24.67 9.09 -295.36 -2.69 -27.36 16 8 C 0.24 12.20 7.53 85.44 0.64 12.85 16 9 O -0.32 -16.05 9.94 -87.33 -0.87 -16.92 16 10 C 0.04 1.52 10.41 113.37 1.18 2.70 16 11 C -0.02 -1.27 4.76 -21.00 -0.10 -1.37 16 12 C -0.47 -28.88 8.94 23.35 0.21 -28.67 16 13 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 14 C 0.07 3.98 4.85 85.24 0.41 4.40 16 15 N -0.85 -49.69 13.93 21.83 0.30 -49.39 16 16 Si 0.96 45.64 24.84 68.60 1.70 47.34 16 17 H -0.22 -9.32 5.43 99.48 0.54 -8.78 16 18 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H 0.11 2.82 8.14 -2.39 -0.02 2.81 16 21 H 0.07 1.81 7.70 -2.39 -0.02 1.79 16 22 H 0.06 1.66 7.72 -2.38 -0.02 1.64 16 23 H 0.16 4.71 6.44 -2.91 -0.02 4.69 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.09 1.89 8.07 -2.39 -0.02 1.87 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.81 8.04 -2.39 -0.02 1.79 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 30 H 0.29 15.13 8.30 -92.71 -0.77 14.36 16 Total: -1.00 -71.25 254.93 3.60 -67.65 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.97 Total: 6.17 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 4.70 Total: -12.65 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.38 Total: -76.75 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -1.40 Total: -31.77 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.70 Total: 47.34 kcal Total: -71.25 3.60 -67.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214676929.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.038 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds