Wall clock time and date at job start Mon Mar 30 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46966 * 110.99610 * 2 1 4 4 C 1.53325 * 109.14041 * 51.85858 * 3 2 1 5 5 C 1.51558 * 108.04736 * 49.10552 * 4 3 2 6 6 S 1.75563 * 125.74830 * 164.38813 * 5 4 3 7 7 C 1.75770 * 91.23502 * 180.02562 * 6 5 4 8 8 C 1.39912 * 125.39913 * 179.97438 * 7 6 5 9 9 H 1.08008 * 120.00044 * 179.97438 * 8 7 6 10 10 C 1.40071 * 120.00049 * 359.97438 * 8 7 6 11 11 N 1.30869 * 119.99891 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46948 * 90.00044 * 12 10 8 14 14 H 1.48499 * 109.47137 * 210.00253 * 12 10 8 15 15 H 1.48503 * 109.47271 * 330.00593 * 12 10 8 16 16 C 1.37890 * 109.20152 * 359.97115 * 7 6 5 17 17 C 1.36050 * 123.71225 * 344.37996 * 5 4 3 18 18 C 1.46898 * 110.99954 * 124.37547 * 2 1 3 19 19 H 1.08992 * 109.47459 * 59.99950 * 1 2 3 20 20 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47033 * 300.00053 * 1 2 3 22 22 H 1.09000 * 109.52202 * 171.75898 * 3 2 1 23 23 H 1.09001 * 109.52715 * 291.95975 * 3 2 1 24 24 H 1.09002 * 109.74625 * 168.73824 * 4 3 2 25 25 H 1.08999 * 109.75025 * 289.41536 * 4 3 2 26 26 H 0.96997 * 120.00185 * 180.02562 * 11 10 8 27 27 H 1.08000 * 122.51247 * 179.97438 * 16 7 6 28 28 H 1.09000 * 109.61611 * 48.38649 * 18 2 1 29 29 H 1.09001 * 109.61135 * 168.92475 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 1.3406 2.1620 1.1392 5 6 1.4421 1.3333 2.4041 6 16 1.2015 1.9244 4.0396 7 6 1.5155 0.3275 4.7036 8 6 1.5001 -0.0023 6.0632 9 1 1.7060 -1.0155 6.3755 10 6 1.2175 0.9815 7.0194 11 7 0.9674 2.2091 6.6409 12 14 1.1961 0.5411 8.8346 13 1 2.5541 0.7287 9.4054 14 1 0.2341 1.4206 9.5461 15 1 0.7833 -0.8764 8.9952 16 6 1.7794 -0.5487 3.6721 17 6 1.7383 0.0055 2.4152 18 6 1.9955 -0.7743 1.1319 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0754 1.3478 0.1473 23 1 1.7675 1.8499 -0.9528 24 1 1.8612 3.1097 1.2771 25 1 0.2929 2.3483 0.9033 26 1 0.7721 2.8905 7.3030 27 1 2.0025 -1.5921 3.8395 28 1 1.4900 -1.7387 1.1821 29 1 3.0673 -0.9261 1.0044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214701155.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:43 Heat of formation + Delta-G solvation = 9.397509 kcal Electronic energy + Delta-G solvation = -13141.070249 eV Core-core repulsion = 10961.451282 eV Total energy + Delta-G solvation = -2179.618967 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.61886 -35.08180 -33.49066 -30.71287 -29.08720 -26.80655 -25.29406 -22.61087 -21.81993 -19.62224 -17.84557 -16.78862 -15.37678 -15.06957 -14.86416 -13.93733 -13.74558 -13.40763 -12.84656 -12.14236 -11.99889 -11.64475 -11.59233 -11.33604 -11.29526 -11.14115 -10.76584 -10.48917 -10.36408 -10.06952 -9.91369 -9.34308 -8.92427 -7.67561 -7.22390 -6.94987 -6.61837 -4.47573 2.60236 2.93428 2.98493 3.07438 3.62798 3.72625 4.04103 4.14140 4.66984 5.03985 5.57653 5.67013 5.86084 6.02066 6.09314 6.16729 6.26783 6.38383 6.42672 6.47716 6.62372 6.76907 6.87658 7.28529 7.44813 7.57906 7.62523 7.84899 8.10333 8.20494 8.57524 8.61455 9.87878 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.059774 B = 0.008151 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.314806 B = 3434.199595 C = 3711.810209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.062 3.938 4 C -0.050 4.050 5 C -0.383 4.383 6 S 0.135 5.865 7 C 0.037 3.963 8 C -0.394 4.394 9 H 0.092 0.908 10 C 0.052 3.948 11 N -0.789 5.789 12 Si 0.933 3.067 13 H -0.266 1.266 14 H -0.274 1.274 15 H -0.259 1.259 16 C -0.344 4.344 17 C -0.073 4.073 18 C 0.114 3.886 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.295 0.705 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -0.119 -4.145 4.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.260 5.260 3 C -0.068 4.068 4 C -0.091 4.091 5 C -0.500 4.500 6 S 0.398 5.602 7 C -0.083 4.083 8 C -0.430 4.430 9 H 0.110 0.890 10 C -0.168 4.168 11 N -0.417 5.417 12 Si 0.757 3.243 13 H -0.191 1.191 14 H -0.198 1.198 15 H -0.183 1.183 16 C -0.369 4.369 17 C -0.086 4.086 18 C -0.016 4.016 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.649 1.266 -3.932 4.181 hybrid contribution 0.065 -1.151 1.072 1.574 sum -0.584 0.115 -2.860 2.921 Atomic orbital electron populations 1.22343 0.88278 1.01280 1.00800 1.62438 1.07950 1.13522 1.42107 1.22113 0.99402 0.88327 0.96951 1.20352 0.99180 0.97041 0.92491 1.24631 1.27469 0.97961 0.99891 1.84336 1.71981 1.11449 0.92481 1.21609 0.96160 0.94441 0.96116 1.19124 1.37405 0.97067 0.89357 0.89047 1.26167 0.93162 0.94214 1.03228 1.68847 1.33116 1.02336 1.37401 0.85857 0.79138 0.79842 0.79479 1.19094 1.19849 1.18298 1.19470 1.27427 0.99064 0.90955 1.19476 1.01206 0.93285 0.94612 1.21094 0.99253 0.95311 0.85913 0.92581 0.92414 0.93681 0.91336 0.91678 0.92855 0.93233 0.89261 0.88577 0.91172 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.81 60.07 0.53 0.90 15 2 N -0.54 -9.79 5.20 -243.07 -1.26 -11.05 15 3 C 0.06 1.08 6.02 -3.62 -0.02 1.06 15 4 C -0.05 -0.99 5.70 -27.29 -0.16 -1.14 15 5 C -0.38 -9.06 5.64 -34.67 -0.20 -9.26 15 6 S 0.14 3.47 20.24 -107.50 -2.18 1.29 15 7 C 0.04 1.01 6.17 -39.08 -0.24 0.77 15 8 C -0.39 -10.32 9.29 -38.27 -0.36 -10.68 15 9 H 0.09 2.28 7.85 -52.48 -0.41 1.87 15 10 C 0.05 1.25 5.50 -17.27 -0.09 1.16 15 11 N -0.79 -19.66 10.65 55.56 0.59 -19.06 15 12 Si 0.93 18.05 29.56 -169.99 -5.03 13.02 15 13 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 14 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 15 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 16 C -0.34 -8.91 10.02 -40.00 -0.40 -9.31 15 17 C -0.07 -1.73 5.33 -104.88 -0.56 -2.28 15 18 C 0.11 2.26 6.02 -4.16 -0.03 2.24 15 19 H 0.06 0.83 8.14 -51.93 -0.42 0.40 15 20 H 0.06 0.92 8.03 -51.93 -0.42 0.50 15 21 H 0.04 0.88 5.54 -51.93 -0.29 0.59 15 22 H 0.07 1.20 8.06 -51.93 -0.42 0.79 15 23 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.05 0.95 6.98 -51.93 -0.36 0.58 15 26 H 0.29 6.61 8.30 -40.82 -0.34 6.28 15 27 H 0.10 2.39 8.06 -52.49 -0.42 1.97 15 28 H 0.07 1.32 7.98 -51.93 -0.41 0.91 15 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 LS Contribution 248.85 15.07 3.75 3.75 Total: -1.00 -27.40 248.85 -9.20 -36.60 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.56 Total: 2.01 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -1.52 Total: -26.55 kcal Atomic # 7 Polarization: -29.44 SS G_CDS: -0.67 Total: -30.12 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.18 Total: 1.29 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.40 -9.20 -36.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214701155.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.998 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds